Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5444
(490 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z92789-7|CAB07215.2| 1319|Caenorhabditis elegans Hypothetical pr... 36 0.012
U42835-2|AAA83586.1| 617|Caenorhabditis elegans Chitinase prote... 36 0.021
U39678-12|AAK39209.2| 1185|Caenorhabditis elegans Hypothetical p... 31 0.34
Z32840-1|CAA83679.1| 584|Caenorhabditis elegans Hypothetical pr... 30 0.78
DQ340623-1|ABC65811.1| 584|Caenorhabditis elegans chondroitin p... 30 0.78
U10438-1|AAA19083.3| 524|Caenorhabditis elegans Hypothetical pr... 30 1.0
DQ340624-1|ABC65812.1| 524|Caenorhabditis elegans chondroitin p... 30 1.0
Z82286-2|CAB05306.1| 397|Caenorhabditis elegans Hypothetical pr... 29 1.4
AF003135-8|AAK18984.1| 235|Caenorhabditis elegans Hypothetical ... 29 1.4
U41992-3|AAL02507.1| 134|Caenorhabditis elegans Hypothetical pr... 28 4.2
Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical pr... 27 7.3
U00055-4|AAA50720.2| 431|Caenorhabditis elegans Hypothetical pr... 27 7.3
AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein. 27 7.3
AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP ... 27 7.3
U97017-1|AAB52363.1| 2643|Caenorhabditis elegans Temporarily ass... 27 9.7
U58760-9|AAK31465.1| 654|Caenorhabditis elegans Dishevelled rel... 27 9.7
AC024791-14|AAF60658.1| 767|Caenorhabditis elegans P300/cbp ass... 27 9.7
>Z92789-7|CAB07215.2| 1319|Caenorhabditis elegans Hypothetical
protein H02I12.1 protein.
Length = 1319
Score = 36.3 bits (80), Expect = 0.012
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +3
Query: 165 KYWKCDNGVAELKTCGNGLAFDATDSKYLTENCDYLHNV-ECGERTQLRAPNLHSP 329
KY +C NG A ++ CG L F+ T+ C Y V ECG + +P + +P
Sbjct: 707 KYIQCSNGAAIVRRCGESLYFNEA-----TQECTYRDEVPECGSQGSTSSPVITTP 757
Score = 26.6 bits (56), Expect = 9.7
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = +2
Query: 416 QCSPGLAYDRESRVCMWADQVPEC 487
+C L ++ ++ C + D+VPEC
Sbjct: 720 RCGESLYFNEATQECTYRDEVPEC 743
>U42835-2|AAA83586.1| 617|Caenorhabditis elegans Chitinase protein
1 protein.
Length = 617
Score = 35.5 bits (78), Expect = 0.021
Identities = 17/41 (41%), Positives = 24/41 (58%)
Frame = +3
Query: 111 SFKCPDDFGFYPHHISCDKYWKCDNGVAELKTCGNGLAFDA 233
+FKC D GF+ C K+ +C NG++ C NGL+F A
Sbjct: 563 AFKCTKD-GFFGVPSDCLKFIRCVNGISYNFECPNGLSFHA 602
>U39678-12|AAK39209.2| 1185|Caenorhabditis elegans Hypothetical
protein C39D10.7 protein.
Length = 1185
Score = 31.5 bits (68), Expect = 0.34
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +3
Query: 120 CPDDFGFYPHHISCD-KYWKCDNGVAELKTCGNGLAFD 230
CPD G Y + C KY +C N V ++C GL FD
Sbjct: 43 CPDGDGLYA--VGCSSKYLQCVNNVEYEQSCPEGLYFD 78
Score = 29.1 bits (62), Expect = 1.8
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 7/65 (10%)
Frame = +3
Query: 141 YPHHISCDKY-WKCDNGVAELKTCGNGLAFDATDSKYLTEN-CDYLHNV-EC----GERT 299
+ ++ C Y W+C NG KTC L + L +N CD+ +V +C G T
Sbjct: 211 FTDNVKCSPYFWQCSNGKLFRKTCPEKLIY------VLDQNLCDFPESVKDCPEYNGSET 264
Query: 300 QLRAP 314
RAP
Sbjct: 265 SYRAP 269
Score = 27.1 bits (57), Expect = 7.3
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +3
Query: 132 FGFYPHHISCDKYWKCDNGVAELKTCGNGLAFD 230
FG H S + CDNGV + C + L FD
Sbjct: 360 FGIKECHAS---FLSCDNGVGRVIQCADNLVFD 389
Score = 27.1 bits (57), Expect = 7.3
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +2
Query: 419 CSPGLAYDRESRVCMWADQVPECK 490
C+PGL Y+ ++ +C + V CK
Sbjct: 919 CAPGLFYNEKNGMCAYKHTVDTCK 942
>Z32840-1|CAA83679.1| 584|Caenorhabditis elegans Hypothetical
protein C07G2.1a protein.
Length = 584
Score = 30.3 bits (65), Expect = 0.78
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +3
Query: 135 GFYPHHISCDKYWKCDNGVAELKTCGNGLAFDATDSKYLTENCDYLHNV-EC 287
GFY D Y C NG C LAFD +++ + CDY+ NV EC
Sbjct: 220 GFYSFGECSDHYTACSNGYLIPMQCPARLAFD--EARVI---CDYVMNVPEC 266
>DQ340623-1|ABC65811.1| 584|Caenorhabditis elegans chondroitin
proteoglycan-1 protein.
Length = 584
Score = 30.3 bits (65), Expect = 0.78
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +3
Query: 135 GFYPHHISCDKYWKCDNGVAELKTCGNGLAFDATDSKYLTENCDYLHNV-EC 287
GFY D Y C NG C LAFD +++ + CDY+ NV EC
Sbjct: 220 GFYSFGECSDHYTACSNGYLIPMQCPARLAFD--EARVI---CDYVMNVPEC 266
>U10438-1|AAA19083.3| 524|Caenorhabditis elegans Hypothetical
protein B0280.5 protein.
Length = 524
Score = 29.9 bits (64), Expect = 1.0
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 419 CSPGLAYDRESRVCMWADQVPECK 490
C L YD +S+ C+W V ECK
Sbjct: 168 CPTPLFYDADSQKCIWKSLVEECK 191
>DQ340624-1|ABC65812.1| 524|Caenorhabditis elegans chondroitin
proteoglycan-2 protein.
Length = 524
Score = 29.9 bits (64), Expect = 1.0
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 419 CSPGLAYDRESRVCMWADQVPECK 490
C L YD +S+ C+W V ECK
Sbjct: 168 CPTPLFYDADSQKCIWKSLVEECK 191
>Z82286-2|CAB05306.1| 397|Caenorhabditis elegans Hypothetical
protein W02A2.3 protein.
Length = 397
Score = 29.5 bits (63), Expect = 1.4
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +2
Query: 410 RYQCSPGLAYDRESRVCMW 466
R C+PG +D +S+VC+W
Sbjct: 307 RMPCAPGTVFDVQSQVCVW 325
>AF003135-8|AAK18984.1| 235|Caenorhabditis elegans Hypothetical
protein W03F11.1 protein.
Length = 235
Score = 29.5 bits (63), Expect = 1.4
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +3
Query: 150 HISCDKYWKCDNGVAELKTCGNGLAFDAT 236
H +K+WKC+ G + TC +DAT
Sbjct: 29 HFDSNKFWKCEGGRWIVVTCQINYFYDAT 57
Score = 29.1 bits (62), Expect = 1.8
Identities = 9/32 (28%), Positives = 19/32 (59%)
Frame = +3
Query: 135 GFYPHHISCDKYWKCDNGVAELKTCGNGLAFD 230
G+ P +C +++C +G+ ++CG G +D
Sbjct: 164 GYKPDVYNCKNFYQCASGLWTQRSCGEGTIWD 195
>U41992-3|AAL02507.1| 134|Caenorhabditis elegans Hypothetical
protein F32E10.8 protein.
Length = 134
Score = 27.9 bits (59), Expect = 4.2
Identities = 14/45 (31%), Positives = 18/45 (40%)
Frame = +3
Query: 114 FKCPDDFGFYPHHISCDKYWKCDNGVAELKTCGNGLAFDATDSKY 248
F+C D + CDKY C +G E + C L T Y
Sbjct: 90 FRCTDSSSCIAPNRVCDKYKDCRDGSDERENCNQPLGTPNTTVIY 134
>Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical
protein C05C12.3 protein.
Length = 1694
Score = 27.1 bits (57), Expect = 7.3
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = -2
Query: 324 SGDWGLEAVSSLRTQRCEGSRSSRSSIWNLWRRKRD 217
SGD G E +SS++ +R+S S++N RKR+
Sbjct: 658 SGDAGRERMSSMQISLINNARNSIISLFNGGGRKRE 693
>U00055-4|AAA50720.2| 431|Caenorhabditis elegans Hypothetical
protein R02F2.4 protein.
Length = 431
Score = 27.1 bits (57), Expect = 7.3
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = +2
Query: 419 CSPGLAYDRESRVCMWADQVPEC 487
CS L YD ++ C W + EC
Sbjct: 149 CSTPLIYDPTNKKCSWKGMIDEC 171
>AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein.
Length = 1694
Score = 27.1 bits (57), Expect = 7.3
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = -2
Query: 324 SGDWGLEAVSSLRTQRCEGSRSSRSSIWNLWRRKRD 217
SGD G E +SS++ +R+S S++N RKR+
Sbjct: 658 SGDAGRERMSSMQISLINNARNSIISLFNGGGRKRE 693
>AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP
homologous cationchannel protein.
Length = 1681
Score = 27.1 bits (57), Expect = 7.3
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = -2
Query: 324 SGDWGLEAVSSLRTQRCEGSRSSRSSIWNLWRRKRD 217
SGD G E +SS++ +R+S S++N RKR+
Sbjct: 645 SGDAGRERMSSMQISLINNARNSIISLFNGGGRKRE 680
>U97017-1|AAB52363.1| 2643|Caenorhabditis elegans Temporarily assigned
gene nameprotein 162 protein.
Length = 2643
Score = 26.6 bits (56), Expect = 9.7
Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
Frame = -3
Query: 485 TPEPDQPTCRRGTLCRRQVRGCTDS-GRASPFQQFQK-TSHLFSSGKMPYSLEQWGVEIG 312
TP + PT R+ LC R S G + F F + TS F S K P L +I
Sbjct: 2284 TPSENSPTVRKECLCVHSTRLDNGSCGSSDSFIAFTRFTSIEFLSTK-PGDLTSPNKQI- 2341
Query: 311 GSKLCPLSALNVVKVVAVLGQVF 243
S C +S + V A G+++
Sbjct: 2342 TSNGCVMSKIGAVTADATRGRIY 2364
>U58760-9|AAK31465.1| 654|Caenorhabditis elegans Dishevelled
related protein 2 protein.
Length = 654
Score = 26.6 bits (56), Expect = 9.7
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 252 TENCDYLHNVECGERTQLRAPN 317
T+ C Y+ EC + TQLR P+
Sbjct: 553 TKECYYVMGDECADYTQLRGPD 574
>AC024791-14|AAF60658.1| 767|Caenorhabditis elegans P300/cbp
associated factor homologprotein 1 protein.
Length = 767
Score = 26.6 bits (56), Expect = 9.7
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +3
Query: 189 VAELKTCGNGLAFDATDSKYLTE 257
+ E +TCG+ ++F A KYL++
Sbjct: 69 IIECRTCGHSISFHAEPLKYLSQ 91
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,958,715
Number of Sequences: 27780
Number of extensions: 221585
Number of successful extensions: 753
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 914086948
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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