Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5443
         (656 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyc...    28   1.0  
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar...    26   5.5  
SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase |Schizosacch...    26   5.5  
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca...    25   7.3  
SPBC337.04 |ppk27||serine/threonine protein kinase Ppk27 |Schizo...    25   9.6  
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz...    25   9.6  

>SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 442

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +3

Query: 522 LGSVKNHLFNKSETDFFVLFWYFGNFWYPFQYLE 623
           LG++++    ++E D F  FWY  + W  F+YL+
Sbjct: 206 LGTIES---TRAEVDNFYNFWYNFDSWRSFEYLD 236


>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 682

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -2

Query: 493 SFTPILSKRKPESKIPLPMLTFY 425
           ++TP++S RK +SK+   +L FY
Sbjct: 159 AYTPMVSYRKLKSKLKTTLLDFY 181


>SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -3

Query: 120 KLREFLPSHIILNKVCMYVSTNYVLFLIELMSQFN 16
           K  ++L + +++   C YV++ Y L LI     FN
Sbjct: 177 KWNQYLETCVLVQSRCFYVNSYYGLSLIPFFDIFN 211


>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
           cancers-1 homolog 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 676

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = -1

Query: 269 IKERKLISDSARF-TSFIYFVLEYINLYLHQIRNTHTFHSSQKPYLVTKKRNFANFY 102
           +K ++  SD  +  +SF+YF++   N  LH I          +P +   +  F+ F+
Sbjct: 487 MKSQQNASDCKKLLSSFLYFLINNFNDNLHIIELLQKDKRKFEPIIAWSETEFSEFF 543


>SPBC337.04 |ppk27||serine/threonine protein kinase Ppk27
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 413

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = -3

Query: 174 KHTHISQQSETLFSHEEKKLREFLPSHIILNKVCMYVSTNYVLFLIELM 28
           KHTH+S +S+       K  R+ + +   L+  C+    NY +   EL+
Sbjct: 133 KHTHLSSKSQNEKKARVKVFRQEIWALKTLSHPCVVQLLNYYVSSAELI 181


>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +3

Query: 579 FWYFGNFWYPFQY 617
           FWY  N W  F+Y
Sbjct: 452 FWYLNNIWSVFEY 464


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,702,950
Number of Sequences: 5004
Number of extensions: 57372
Number of successful extensions: 124
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)