Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5441
         (397 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   2.2  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   2.9  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   3.9  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   5.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   5.1  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    21   5.1  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   5.1  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   6.8  
DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein ...    20   9.0  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +1

Query: 25  IKNTPSIHHHLHTIKRP 75
           +K   S+H  +HT +RP
Sbjct: 131 VKENLSVHRRIHTKERP 147


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 7/25 (28%), Positives = 17/25 (68%)
 Frame = -2

Query: 276 DEFFGFIRIWIFEPTVWIFDLSSMI 202
           D+ +GF+ + +    +WIF ++S++
Sbjct: 475 DQDWGFVAMVLDRLFLWIFTIASIV 499


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.4 bits (43), Expect = 3.9
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = +1

Query: 7  PFFKKFIKNTPSIH 48
          P+F++ +K+TP  H
Sbjct: 55 PYFRELLKSTPCKH 68


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 5/19 (26%), Positives = 14/19 (73%)
 Frame = +1

Query: 238 LEDPDSNETKEFVEAQNKI 294
           +ED D N+ + +++A++ +
Sbjct: 566 IEDADKNQCRHYLDAKSSV 584


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 10/20 (50%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
 Frame = -3

Query: 152  IFLED-NIVVPVQVTILLIV 96
            IF+ + N+VVPV   IL+I+
Sbjct: 1580 IFMANLNLVVPVVAAILVII 1599


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +1

Query: 112 VTCTGTTILSSRNM 153
           +TC G T + SRN+
Sbjct: 12  ITCQGVTDIHSRNL 25


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +1

Query: 97  TINRIVTCTGTTILS 141
           T+N I+ C G T L+
Sbjct: 253 TVNLIIPCVGITFLT 267


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +1

Query: 97  TINRIVTCTGTTILS 141
           T+N I+ C G + LS
Sbjct: 240 TVNLIIPCVGISFLS 254


>DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein 5
          protein.
          Length = 104

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +1

Query: 19 KFIKNTPSIHHHLHTI 66
          KF+K+ P +   LH I
Sbjct: 25 KFLKDRPYVQKQLHCI 40


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,186
Number of Sequences: 438
Number of extensions: 2463
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9761793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)