Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5436
         (618 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z84574-5|CAB06541.1|  846|Caenorhabditis elegans Hypothetical pr...    31   0.66 
U28737-2|AAA68272.1|  455|Caenorhabditis elegans Patterned expre...    29   2.7  
U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell l...    29   2.7  
AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger p...    29   2.7  
Z69302-10|CAA93267.1|  295|Caenorhabditis elegans Hypothetical p...    28   6.1  
Z47074-3|CAA87376.1|  295|Caenorhabditis elegans Hypothetical pr...    28   6.1  
AF008590-1|AAB63299.1|  295|Caenorhabditis elegans paraquat resp...    28   6.1  
Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>Z84574-5|CAB06541.1|  846|Caenorhabditis elegans Hypothetical
           protein F33E2.6 protein.
          Length = 846

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 22/73 (30%), Positives = 27/73 (36%)
 Frame = +2

Query: 62  PASTQPDSTQPFAQTIRSAMWTPSLSTPHREMPIPEWVRNPAILPIARAASNSVPKYPAD 241
           P  T P  T+P  +T       P +  P  E P  E    P   P       + PK   +
Sbjct: 367 PPKTDPPRTEP-PKTEPPTTEPPKIEPPRTEPPKTE--PPPTEPPKTEPPKTTPPK--TE 421

Query: 242 FPAALCPNYPYCW 280
            P    PN PYCW
Sbjct: 422 PPTTEPPNIPYCW 434


>U28737-2|AAA68272.1|  455|Caenorhabditis elegans Patterned
           expression site protein23 protein.
          Length = 455

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 22/65 (33%), Positives = 31/65 (47%)
 Frame = +1

Query: 310 QQVNDFCGCTLFIYII*KIEHIDQPCYCGNYHLISNKTLTAQHGLGITMHVQVASFIIPS 489
           QQV  F G  LF YI    +H  +   C    LIS+  L  +  L  T+ + +  FII +
Sbjct: 88  QQVGIFVGSILFGYIS---DHFGRQKVCQYSLLISSVILLVEGFLSSTILIALCRFIIGT 144

Query: 490 IWGAL 504
             GA+
Sbjct: 145 QTGAI 149


>U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell
           lineage protein 13 protein.
          Length = 2248

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +3

Query: 222 CPSIRLIFRLPYALTTHTAGEYTSYLR*STTSQRFLRMYTFYIY 353
           C     ++   Y LT H   E+  YLR  T  Q+ L +   Y+Y
Sbjct: 361 CDICYRVYPSRYELTKHDCKEFAEYLRQLTFKQQTLHLEAAYMY 404


>AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger
           protein LIN-13 protein.
          Length = 2248

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +3

Query: 222 CPSIRLIFRLPYALTTHTAGEYTSYLR*STTSQRFLRMYTFYIY 353
           C     ++   Y LT H   E+  YLR  T  Q+ L +   Y+Y
Sbjct: 361 CDICYRVYPSRYELTKHDCKEFAEYLRQLTFKQQTLHLEAAYMY 404


>Z69302-10|CAA93267.1|  295|Caenorhabditis elegans Hypothetical
           protein F40F8.7 protein.
          Length = 295

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = +2

Query: 62  PASTQPDSTQPFAQTIRSAMWTPSLSTPHREMPIPEWVRNPAILPIARAASN 217
           PA++ P +T P   TI+  +     ST +   P P  ++N   LP+     N
Sbjct: 12  PATSSPPTTMPKLPTIQDMLNNIGASTVNLMQPNPYLMQNQIPLPVPNLPLN 63


>Z47074-3|CAA87376.1|  295|Caenorhabditis elegans Hypothetical
           protein F40F8.7 protein.
          Length = 295

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = +2

Query: 62  PASTQPDSTQPFAQTIRSAMWTPSLSTPHREMPIPEWVRNPAILPIARAASN 217
           PA++ P +T P   TI+  +     ST +   P P  ++N   LP+     N
Sbjct: 12  PATSSPPTTMPKLPTIQDMLNNIGASTVNLMQPNPYLMQNQIPLPVPNLPLN 63


>AF008590-1|AAB63299.1|  295|Caenorhabditis elegans paraquat
           responsive protein protein.
          Length = 295

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = +2

Query: 62  PASTQPDSTQPFAQTIRSAMWTPSLSTPHREMPIPEWVRNPAILPIARAASN 217
           PA++ P +T P   TI+  +     ST +   P P  ++N   LP+     N
Sbjct: 12  PATSSPPTTMPKLPTIQDMLNNIGASTVNLMQPNPYLMQNQIPLPVPNLPLN 63


>Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical protein
            T28C6.9 protein.
          Length = 1861

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -1

Query: 507  AECPPD*WNDKGGNLDMHSDTQPVL 433
            +E   D WND  G +D   DTQ VL
Sbjct: 1524 SEWNDDGWNDDDGEIDRMKDTQKVL 1548


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,086,324
Number of Sequences: 27780
Number of extensions: 378904
Number of successful extensions: 838
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)