Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5435
         (656 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    29   0.45 
SPAP27G11.05c |vps41||vacuolar protein sorting-associated protei...    28   1.4  
SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces pomb...    27   1.8  
SPCC126.01c ||SPCC576.18c|conserved fungal protein|Schizosacchar...    26   5.5  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    25   7.3  
SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces pom...    25   9.6  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    25   9.6  
SPBC18H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    25   9.6  
SPCC1682.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   9.6  

>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 29.5 bits (63), Expect = 0.45
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -2

Query: 157 GGRTHSPRGVMWLLEPIDVYN 95
           GG  H P  VMWLL P D+Y+
Sbjct: 235 GGPLHDPNTVMWLLRP-DIYS 254


>SPAP27G11.05c |vps41||vacuolar protein sorting-associated protein
           Vps41|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 886

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +1

Query: 175 KKNHKFEYIFESI*ELYLSDNSKIDYINLFGK 270
           K+N K   + ES+  LYL DN  ID  +L+ K
Sbjct: 498 KENQKSSTLTESLAFLYLEDNMPIDAFHLYLK 529


>SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 414

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +2

Query: 362 LEKSSCLIHCNGIDSISRDHDQPRLAEFLRSVSTDXILTDAIL 490
           LE+ SCL +CNG+ +I++        EF + V +   + + I+
Sbjct: 139 LEEFSCLANCNGLRTITKCVKDVSFDEFRKDVISCSTIENKIM 181


>SPCC126.01c ||SPCC576.18c|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 369

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +2

Query: 302 TGNHPASLITCQTFSQPQSLLEKSSCLIHCNGIDSISR 415
           +G+  ASLI     SQP  LL K +   H  GI+ I+R
Sbjct: 149 SGSTDASLIVWDVSSQPSRLLYKLTG--HSRGIECITR 184


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -2

Query: 298 EDMARMHVHFFQINLYNLF*NYLRDII-PKYFQKYIQI 188
           ED   MHV+  Q +L + F NYL  I+  K +Q  ++I
Sbjct: 116 EDFRAMHVNGVQNDLVSTFPNYLISILESKNWQLLLEI 153


>SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 292

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -3

Query: 324 NDAGWLPVWKIWHEC 280
           ND  W P W+ +H C
Sbjct: 202 NDRSWRPFWENYHGC 216


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -2

Query: 274 HFFQINLYNLF*NYLRDIIPKYFQKYIQIYDFFL 173
           +F  + + NL  NYL +I  K+FQ +  +   F+
Sbjct: 828 YFKCLKVLNLSYNYLTEIPSKFFQNFSDLKHLFV 861


>SPBC18H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 242

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +2

Query: 263 LEKMDMHSCHIFHTGNHPASLITCQTFSQPQSLLEKSSCL 382
           LEK  +HSC  +   NH  + I  Q  +  Q  L K + +
Sbjct: 16  LEKGCLHSCPSYSVNNHVNNPIVKQNSTLTQPSLRKKNTM 55


>SPCC1682.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 238

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +2

Query: 263 LEKMDMHSCHIFHTGNHPASLITCQTFSQPQSLLEKSSCL 382
           LEK  +HSC  +   NH  + I  Q  +  Q  L K + +
Sbjct: 16  LEKGCLHSCPSYSVNNHVNNPIVKQNSTLTQPSLRKKNTM 55


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,681,751
Number of Sequences: 5004
Number of extensions: 53182
Number of successful extensions: 110
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)