Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5435
         (656 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    26   0.28 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.6  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   3.4  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 26.2 bits (55), Expect = 0.28
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +1

Query: 67  YISRWVAHLRCRRLWAPVTT*HHVGCEFVHPSKQ*TKKNHKFE 195
           ++  W  H +CR   A VT  +    +F    K+ TK+N  FE
Sbjct: 426 FVEFWEHHFQCRYPNASVTPYNKNYTKFCSTEKRLTKQNTAFE 468


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = +2

Query: 386  HCNGIDSISRDHDQPRLAEFLRSVSTDXI-LTDAILERLWSVWSIRSYILYIAA 544
            H NGI    + H +P LA+  RSV    +  T A+   L  +    +Y + + A
Sbjct: 1139 HSNGIIQGYKLHYEPILADMWRSVDEMEVRKTSALTTVLTGLRKYTNYTIQVLA 1192


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = +2

Query: 386  HCNGIDSISRDHDQPRLAEFLRSVSTDXI-LTDAILERLWSVWSIRSYILYIAA 544
            H NGI    + H +P LA+  RSV    +  T A+   L  +    +Y + + A
Sbjct: 1135 HSNGIIQGYKLHYEPILADMWRSVDEMEVRKTSALTTVLTGLRKYTNYTIQVLA 1188


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = +3

Query: 384 FTVMVLTASVVITISHD*LNF 446
           FT++++T SVV+TI+   +NF
Sbjct: 305 FTMVLVTLSVVVTIAVLNVNF 325


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,576
Number of Sequences: 438
Number of extensions: 3789
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)