Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5434
         (608 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    29   0.70 
SPAPB17E12.14c |||6-phosphofructo-2-kinase |Schizosaccharomyces ...    27   2.1  
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac...    26   3.7  
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    25   6.5  

>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 28.7 bits (61), Expect = 0.70
 Identities = 13/54 (24%), Positives = 26/54 (48%)
 Frame = -1

Query: 554 KLIDTLYNNNIIITVTSIKHALLSITHQITGQILITFK*DHTRSTCFQIITKKN 393
           K+I  +  N+++IT+  +   + S   +   Q L        RS CF +++ K+
Sbjct: 144 KMISLINFNSLLITIFGLASCVFSFGVRFLWQYLSAIAGKRARSLCFHVLSSKS 197


>SPAPB17E12.14c |||6-phosphofructo-2-kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 10/36 (27%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = -1

Query: 548 IDTLYN-NNIIITVTSIKHALLSITHQITGQILITF 444
           +D +Y   ++I+ +  +KH +L I H++  +I+I +
Sbjct: 389 LDVIYRLQSVIVEIERMKHHVLVIGHRVITRIIIAY 424


>SPAC1751.01c |gti1||gluconate transporter inducer
           Gti1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +1

Query: 91  NPGSSN*RQNVTLIQYTSSSYILF 162
           NP ++N   N+ LIQ+TS S  LF
Sbjct: 476 NPNANNSFVNLNLIQFTSPSQALF 499


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 1   KYFGCYFFVVENVRTIVPHVQV 66
           KYF   F V+ N+  + PHV+V
Sbjct: 707 KYFPIVFDVLMNISNMAPHVKV 728


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,432,897
Number of Sequences: 5004
Number of extensions: 49925
Number of successful extensions: 117
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)