Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5434
         (608 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_02_0012 - 11770058-11770770,11770919-11771000,11771064-117710...    29   2.2  
01_01_1125 - 8920590-8924372                                           28   6.7  

>07_02_0012 -
           11770058-11770770,11770919-11771000,11771064-11771072,
           11771630-11771877,11772006-11772183,11772270-11772278
          Length = 412

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = +3

Query: 39  QDH--RPARSSEVILCATLKSGKLELASKCYSYTIYVIFLYP 158
           +DH  R A    V+  A  +S K+ + S CYSY  Y  + YP
Sbjct: 327 KDHLFRVALPRSVVAVAPPESEKMAMNSLCYSYYYYPAYPYP 368


>01_01_1125 - 8920590-8924372
          Length = 1260

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = +3

Query: 48  RPARSSEVILCATLKSGKLELASKCY 125
           RPAR S  I CAT   G   LA  C+
Sbjct: 46  RPARPSRSIACATCFGGASPLAPSCW 71


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,294,058
Number of Sequences: 37544
Number of extensions: 264804
Number of successful extensions: 466
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 466
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)