Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5434
         (608 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77652-7|CAB01119.1|  341|Caenorhabditis elegans Hypothetical pr...    29   2.0  
AF016685-12|AAG24142.1|  222|Caenorhabditis elegans Hypothetical...    28   4.5  
Z93389-4|CAE17923.1|  324|Caenorhabditis elegans Hypothetical pr...    27   7.9  

>Z77652-7|CAB01119.1|  341|Caenorhabditis elegans Hypothetical
           protein C06B3.10 protein.
          Length = 341

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 16/57 (28%), Positives = 29/57 (50%)
 Frame = +3

Query: 6   FWVLFFRGGKCQDHRPARSSEVILCATLKSGKLELASKCYSYTIYVIFLYPLPSVLS 176
           F ++ + G KC  H  + SS+ +  ++  S + +L       TI  +FL  +PS +S
Sbjct: 211 FGLILYFGTKCHLHTKSLSSKTVTSSSRFSLQSQLFYALVFQTIIPVFLMHIPSTIS 267


>AF016685-12|AAG24142.1|  222|Caenorhabditis elegans Hypothetical
           protein F59E11.6 protein.
          Length = 222

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -1

Query: 596 YLKIFEKDFEKPKLKLIDTLYNNNIIITVTSIKH 495
           + K F +DFEK   KLI T  N+  + T+ + K+
Sbjct: 116 FFKFFSEDFEKCAEKLITTAKNSTCLDTLFNAKY 149


>Z93389-4|CAE17923.1|  324|Caenorhabditis elegans Hypothetical
           protein T13F3.7 protein.
          Length = 324

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -1

Query: 572 FEKPKLKLIDTLYNNNIIITVTSIKHALLSITHQITGQIL 453
           F KP  K+IDT++ +   I+ T      +S  H I   IL
Sbjct: 132 FYKPSTKIIDTVFRSIFPISTTFAVGCSVSALHSIVTNIL 171


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,238,812
Number of Sequences: 27780
Number of extensions: 264041
Number of successful extensions: 567
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 567
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)