Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5433
         (507 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    25   0.45 
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    25   0.45 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   1.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   1.0  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   4.2  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   4.2  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   4.2  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   5.6  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   5.6  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   7.3  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   9.7  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   9.7  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   9.7  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   9.7  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 25.0 bits (52), Expect = 0.45
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = -2

Query: 407 VGW*SFAPNRSEVVQEIFSGVVELVLVGTTKALLNARVGPEPFHRGEKLLT 255
           V W SF  ++S V   +  GV  L+ + T  + +NA + P  + +   + T
Sbjct: 258 VSWVSFWLDQSAVPARVSLGVTTLLTMATQTSGINASLPPVSYTKAIDIWT 308


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 25.0 bits (52), Expect = 0.45
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = -2

Query: 407 VGW*SFAPNRSEVVQEIFSGVVELVLVGTTKALLNARVGPEPFHRGEKLLT 255
           V W SF  ++S V   +  GV  L+ + T  + +NA + P  + +   + T
Sbjct: 258 VSWVSFWLDQSAVPARVSLGVTTLLTMATQTSGINASLPPVSYTKAIDIWT 308


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +1

Query: 328 TSTNSTTPLNISWTTSDRLGAKDYQPTEQDILR 426
           T+T S  PLNI W+T+D     D  P  + +LR
Sbjct: 53  TATGSP-PLNIDWSTADGHPVNDV-PGVRRVLR 83


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +1

Query: 328 TSTNSTTPLNISWTTSDRLGAKDYQPTEQDILR 426
           T+T S  PLNI W+T+D     D  P  + +LR
Sbjct: 53  TATGSP-PLNIDWSTADGHPVNDV-PGVRRVLR 83


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 9   LGAGESGKSTIVKQMKIIHESGFTNE 86
           +G    GKSTIVK +  +    F NE
Sbjct: 48  IGHVAHGKSTIVKAISGVQTVRFKNE 73


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -3

Query: 325 ERPKHS*TPESAQSLFIAARSSSLNGS 245
           E  ++S  P+S   L +++R S +NG+
Sbjct: 232 ESHQNSNVPKSVAGLNVSSRRSDMNGT 258


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 417 ILFGGLVILCS*PVGGRP 364
           +L+G ++I C  PV  RP
Sbjct: 705 VLYGFVIIECQEPVTNRP 722


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 10/71 (14%)
 Frame = -2

Query: 449 IPVVLTLVLRISCSVGW*SFAPNRSEVVQE--------IFSGVVE--LVLVGTTKALLNA 300
           + +VLTLV  I    G   F P+R +V+ +        +FS +    L+L+ T  A+   
Sbjct: 637 LQIVLTLVWMIIEPPGTRFFYPDRKQVILKCNIQDMSFLFSQLYNALLILISTVYAVKTR 696

Query: 299 RVGPEPFHRGE 267
           ++ PE F+  +
Sbjct: 697 KI-PENFNESK 706


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 10/71 (14%)
 Frame = -2

Query: 449 IPVVLTLVLRISCSVGW*SFAPNRSEVVQE--------IFSGVVE--LVLVGTTKALLNA 300
           + +VLTLV  I    G   F P+R +V+ +        +FS +    L+L+ T  A+   
Sbjct: 727 LQIVLTLVWMIIEPPGTRFFYPDRKQVILKCNIQDMSFLFSQLYNALLILISTVYAVKTR 786

Query: 299 RVGPEPFHRGE 267
           ++ PE F+  +
Sbjct: 787 KI-PENFNESK 796


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 11/41 (26%), Positives = 14/41 (34%)
 Frame = -2

Query: 161 GHGTQDGDERLDRIAVDHGPVLFEVFICESTFMDNFHLFDY 39
           GH   D D   D +      V+    IC S  +   H   Y
Sbjct: 118 GHWIGDHDVDKDELITGWSAVVITAAICTSGIVGRTHTVGY 158


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = -2

Query: 407 VGW*SFAPNRSEVVQEIFSGVVELVLVGTTKALLNA 300
           + W SF  NR+     +  GV  ++ + T  +  NA
Sbjct: 237 ISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNA 272


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = -2

Query: 407 VGW*SFAPNRSEVVQEIFSGVVELVLVGTTKALLNA 300
           + W SF  NR+     +  GV  ++ + T  +  NA
Sbjct: 237 ISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNA 272


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = -2

Query: 380 RSEVVQEIFSGVVELVLVGTTK 315
           ++  +Q +F G+VEL++    K
Sbjct: 137 KTTYMQLVFMGIVELIMFTVNK 158


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = -2

Query: 407 VGW*SFAPNRSEVVQEIFSGVVELVLVGTTKALLNA 300
           + W SF  NR+     +  GV  ++ + T  +  NA
Sbjct: 176 ISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNA 211


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,172
Number of Sequences: 438
Number of extensions: 3434
Number of successful extensions: 14
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13986774
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)