Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5431
         (344 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    30   0.12 
SPBC409.06 |uch2||ubiquitin C-terminal hydrolase Uch2|Schizosacc...    29   0.15 
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar...    27   1.1  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    26   1.9  
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ...    25   3.3  
SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr 1|...    25   4.4  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    25   4.4  
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto...    24   5.8  
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    24   5.8  
SPCC794.10 |||UTP-glucose-1-phosphate uridylyltransferase |Schiz...    24   7.6  
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch...    24   7.6  

>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 29.9 bits (64), Expect = 0.12
 Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
 Frame = -2

Query: 199 RMKSSXTSPQTRHFGSSRSTNGAFRYLKH-RSSFSSKPS--LATKGST 65
           RM +S  S   + FG  R+ N A   L+H RS+ S  PS  L+ + ST
Sbjct: 664 RMSNSFASQTKQVFGEQRTENSARESLRHSRSNMSRSPSPMLSRRSST 711


>SPBC409.06 |uch2||ubiquitin C-terminal hydrolase
           Uch2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 300

 Score = 29.5 bits (63), Expect = 0.15
 Identities = 11/46 (23%), Positives = 22/46 (47%)
 Frame = -2

Query: 265 GSNLHVRC*HEP*QERDPILRHRMKSSXTSPQTRHFGSSRSTNGAF 128
           G++ H+RC H      DP +   ++++    +  HF +  + N  F
Sbjct: 125 GNSEHIRCCHNSFARSDPFISEEVRAATDEDEVYHFIAYTNINNVF 170


>SPAC11E3.11c |||guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = -2

Query: 175 PQTRHFGSSRST-NGAFRYLKHRSSFSSKPSLATKGSTSKLTLRHNPLS 32
           P+   +G+SR+    +  YL+ R S + + SL+   STS+ T +   LS
Sbjct: 266 PKVSPYGNSRTPLRDSSNYLRDRRSINRQSSLSIPKSTSETTRKTLALS 314


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.8 bits (54), Expect = 1.9
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 171 KHVISDPPDPLTVLLGTSSTGH 106
           +H++ +PP PLTVL      GH
Sbjct: 499 RHILDNPPKPLTVLDIYFQIGH 520



 Score = 23.8 bits (49), Expect = 7.6
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = -2

Query: 190 SSXTSPQTRHFGSSRSTNGAFRYLKHRSSFSSKPSLATKGSTS 62
           SS  SPQ +     RS N +   + HR   +S  S + +  TS
Sbjct: 825 SSTKSPQHKLSDQPRSRNNSISNVSHRERSNSVSSKSRETRTS 867


>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 965

 Score = 25.0 bits (52), Expect = 3.3
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -2

Query: 190 SSXTSPQTRHFGSSRSTNGAFRYLKHRSSF 101
           S+  SP T++ GS+ +T  +   L+  SSF
Sbjct: 85  SNLDSPSTQNVGSTNNTRASQSLLRRSSSF 114


>SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -2

Query: 118 KHRSSFSSKPSLATKGSTSKLTLRHNPL 35
           ++  SFS KPS+A + S+  +T+  N +
Sbjct: 256 RNNVSFSRKPSIAEQDSSQDITMPPNEI 283


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
            subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +1

Query: 169  FGATSXCFSFCAAGSDHALARVRASNVHAGLSPVSSPTN*SYA 297
            +G TS  +S  + G   + A + +S  ++  SP  SPT+ SY+
Sbjct: 1551 YGLTSPSYSPSSPGYSTSPAYMPSSPSYSPTSPSYSPTSPSYS 1593


>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
           Sec74|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 928

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 118 KHRSSFSSKPSLATKGSTSKLTLRHNPLS 32
           K+R S  SKP +     T K++ +H+P+S
Sbjct: 46  KNRKS-KSKPKVTITSDTPKVSSQHSPVS 73


>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
           Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 11/44 (25%), Positives = 21/44 (47%)
 Frame = -2

Query: 202 HRMKSSXTSPQTRHFGSSRSTNGAFRYLKHRSSFSSKPSLATKG 71
           H    S T   T H  ++ + N +F +  + ++  S PS+  +G
Sbjct: 88  HSPYISPTMSYTNHSPANLTRNSSFNHQHYSTTLRSPPSMRGRG 131


>SPCC794.10 |||UTP-glucose-1-phosphate uridylyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 499

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 21  SARKLNGLCLRVNLLVEPFVASDGFDENDDRC 116
           S R++  L  R ++ V PF+  + +D ND+ C
Sbjct: 137 SIRQIEYLNRRYDVSV-PFILMNSYDTNDETC 167


>SPCC126.07c |||human CTD-binding SR-like protein rA9
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 571

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 17/65 (26%), Positives = 33/65 (50%)
 Frame = -2

Query: 238 HEP*QERDPILRHRMKSSXTSPQTRHFGSSRSTNGAFRYLKHRSSFSSKPSLATKGSTSK 59
           H+  Q+R P  RH   S+ +S  +   G++ S+     +L    S  ++PS +   ++  
Sbjct: 344 HDRRQKR-PTRRHIPCSNKSSGSSTVLGNNSSSKSENSFLASLISNINQPSTSRIDTSFM 402

Query: 58  LTLRH 44
           L+L+H
Sbjct: 403 LSLQH 407


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,278,157
Number of Sequences: 5004
Number of extensions: 21801
Number of successful extensions: 52
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 102111100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)