Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5431
         (344 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1023 - 7996240-7996369,7997166-7997260,7997430-7997515,799...    32   0.14 
03_03_0042 + 14009649-14009866,14011342-14011419,14011791-140119...    30   0.56 
02_05_0311 + 27782110-27782326,27784121-27784268,27784394-277844...    27   5.2  
07_01_0701 - 5284635-5284970,5285086-5285189,5285509-5285622,528...    26   6.9  
06_01_1173 + 10014391-10014678,10015478-10017245,10017333-100174...    26   6.9  
09_03_0158 - 12878690-12879687,12880115-12880178,12880580-12880645     26   9.1  
09_02_0300 - 7073153-7073589,7074058-7074169                           26   9.1  
01_06_1320 + 36272716-36273339,36274222-36275762,36276349-362764...    26   9.1  

>06_01_1023 -
           7996240-7996369,7997166-7997260,7997430-7997515,
           7998034-7998184
          Length = 153

 Score = 31.9 bits (69), Expect = 0.14
 Identities = 15/26 (57%), Positives = 18/26 (69%)
 Frame = +1

Query: 202 AAGSDHALARVRASNVHAGLSPVSSP 279
           A G D+A AR  A+ VHAGL P +SP
Sbjct: 54  AIGCDYAFARDFAAPVHAGLGPKTSP 79


>03_03_0042 +
           14009649-14009866,14011342-14011419,14011791-14011955,
           14012071-14012138,14012219-14012258,14013579-14013690,
           14013859-14013942
          Length = 254

 Score = 29.9 bits (64), Expect = 0.56
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -2

Query: 202 HRMKSSXTSPQTRHFGSSRSTNGAFR-YLKHRSSFSSKPSLATKGSTSK 59
           HR +S   SP++R+   S S + A R Y  HR  +S   SL+  G   +
Sbjct: 162 HRRRSVSRSPRSRYHSYSPSPSPARRDYRDHRDDYSPGESLSPHGQDKR 210


>02_05_0311 +
           27782110-27782326,27784121-27784268,27784394-27784478,
           27784555-27784650,27785666-27785731,27785900-27785998,
           27786145-27786258,27786468-27786578,27786672-27786734,
           27786816-27786908,27787960-27788073,27788440-27788505,
           27788782-27788994,27789086-27789116,27789459-27791587
          Length = 1214

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -2

Query: 154 SSRSTNGAFRYLKHRSSFSS 95
           + R TNG   +LKHRS +SS
Sbjct: 450 AKRKTNGKLIHLKHRSLYSS 469


>07_01_0701 -
           5284635-5284970,5285086-5285189,5285509-5285622,
           5285695-5286286
          Length = 381

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 157 RNDVFGATSXCFSFCAAGSD 216
           RND F   + CF+  AAG D
Sbjct: 341 RNDEFATAAACFNAAAAGKD 360


>06_01_1173 +
           10014391-10014678,10015478-10017245,10017333-10017436,
           10017632-10017706,10017887-10017918,10019396-10019482,
           10020848-10021294,10021477-10021630,10022203-10022329,
           10022547-10022632,10022719-10022790,10023083-10023286,
           10023732-10024049
          Length = 1253

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
 Frame = -2

Query: 205 RHRMKSSXTSPQTRHFGSSRSTNGAFRYLKH---RSSFSSKPSLATKGSTSKLTLRHN 41
           +HR  +    P T +FG  R     F    H    S+   + SL  K S+S    +HN
Sbjct: 445 QHRSTNMENKPPTMNFGECRKLQEKFHGSAHGRTPSTIMRQESLTGKVSSSSNNEKHN 502


>09_03_0158 - 12878690-12879687,12880115-12880178,12880580-12880645
          Length = 375

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 154 SSRSTNGAFRYLKHRSSFSSKP 89
           +S STNG  R LKH++  S  P
Sbjct: 108 NSNSTNGTSRLLKHQAKCSPHP 129


>09_02_0300 - 7073153-7073589,7074058-7074169
          Length = 182

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
 Frame = +3

Query: 72  PFVASDGFDENDDRCLRYL--KAPLVDREDP 158
           P +  DGFDE+ D  L Y   K PLV    P
Sbjct: 85  PVLFRDGFDEDYDNTLSYFSKKKPLVPLPPP 115


>01_06_1320 +
           36272716-36273339,36274222-36275762,36276349-36276490,
           36276622-36276729,36276814-36277026,36277113-36277223,
           36278056-36278250,36278874-36279048,36279189-36279226
          Length = 1048

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +1

Query: 211 SDHALARVRASNVHAGLSPVSSPTN*SYADI 303
           + H+L  + A   + G+ P+S P+N S++DI
Sbjct: 385 NQHSLM-LEADTDYLGIPPISQPSNPSFSDI 414


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,507,405
Number of Sequences: 37544
Number of extensions: 151041
Number of successful extensions: 322
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 322
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 494158076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)