Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5430
         (507 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomy...    28   0.92 
SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|...    27   1.6  
SPAC23A1.14c |||cystathionine gamma-synthase |Schizosaccharomyce...    26   2.8  
SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr 2|||...    25   6.5  
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    25   6.5  

>SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 375

 Score = 27.9 bits (59), Expect = 0.92
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -2

Query: 386 PHPSNQNALLLHGRNRQSTDSQEVLPPVITQI 291
           PHP N   +LL G N Q+  S  + P + T I
Sbjct: 97  PHPENSKIVLLMGSNAQNDPSSPLNPYIRTII 128


>SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 3/27 (11%)
 Frame = +2

Query: 407 ETLKHISQGGVGHLRCTYLRA---PVP 478
           +TLKH+S  G+  + CT LR+   P+P
Sbjct: 407 KTLKHLSVTGINSILCTELRSFSRPIP 433


>SPAC23A1.14c |||cystathionine gamma-synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 398

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 265 NKTQTRKIIICVITGGRTSCESVL 336
           N  QT++ +   +TGG  SC SVL
Sbjct: 306 NSLQTKEFVAKNLTGGHASCFSVL 329


>SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -3

Query: 175 RTPAHRSTRMNRTAYPLGHDDFNHCFTAEIN 83
           R   H   R+N  AY     DF  CFT ++N
Sbjct: 335 RLSTHSLKRINCAAY---RPDFEQCFTGDMN 362


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
           Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 175 ESQAGTNFSNEIRTQQMFMIDFHGERT 255
           E Q+  + S ++R   + + +FHGERT
Sbjct: 579 EFQSDGSVSEKVRLNPLKLSNFHGERT 605


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,101,910
Number of Sequences: 5004
Number of extensions: 42016
Number of successful extensions: 98
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)