Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5430
         (507 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0194 + 1503350-1503554,1504399-1504490,1504835-1504935,150...    28   3.7  
05_03_0527 - 15025031-15025993                                         28   5.0  
05_03_0524 + 14994170-14995132                                         28   5.0  
01_06_1045 - 34086936-34087029,34087093-34087406                       28   5.0  
01_03_0285 - 14604499-14604608,14604692-14605203,14605339-146054...    28   5.0  
01_01_0623 + 4672581-4673413,4674274-4674389,4674694-4674902,467...    27   8.7  

>06_01_0194 +
           1503350-1503554,1504399-1504490,1504835-1504935,
           1506186-1506276,1506616-1506674,1506764-1506884,
           1506959-1507027,1507321-1507373,1507688-1507796,
           1507895-1508065,1508148-1508306,1508561-1508650,
           1508751-1508933,1509837-1510027,1510340-1510787
          Length = 713

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 194 LVPAWDSNTGASLNTNEPDG 135
           +V  WD NTG ++ + EPDG
Sbjct: 292 IVRVWDPNTGNNMTSIEPDG 311


>05_03_0527 - 15025031-15025993
          Length = 320

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -1

Query: 477 GTGALRYVQRKCPTPP*DMCFKVSSIVTTVAPPFKPKRII 358
           G G L ++    P+PP     + S+ ++  +PPFKP R+I
Sbjct: 105 GGGGLAFLPSIFPSPP--PVPRCSTPLSPSSPPFKPSRVI 142


>05_03_0524 + 14994170-14995132
          Length = 320

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -1

Query: 477 GTGALRYVQRKCPTPP*DMCFKVSSIVTTVAPPFKPKRII 358
           G G L ++    P+PP     + S+ ++  +PPFKP R+I
Sbjct: 105 GGGGLAFLPSIFPSPP--PVPRCSTPLSPSSPPFKPSRVI 142


>01_06_1045 - 34086936-34087029,34087093-34087406
          Length = 135

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = -2

Query: 443 APPPLEICVLRSQV*LQRLP---HPSNQNALLLHGRNRQSTDSQEVLP 309
           APPP E   + S+  L  +P   HP  +    +HGRNR  +D   ++P
Sbjct: 44  APPPTECPAISSRNHL--IPGRYHPIPRKYHAIHGRNRLISDKYHMIP 89


>01_03_0285 -
           14604499-14604608,14604692-14605203,14605339-14605418,
           14605597-14605699,14605759-14605907,14606088-14606180,
           14606289-14606675,14607690-14608124,14608198-14608311,
           14608405-14608453,14608684-14608843,14608941-14609499
          Length = 916

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
 Frame = +2

Query: 284 KS*FA*LLVVGPLVSPYSAYFCREAIMRFGLKGGAT--VVTILETLKHI-SQGGVG 442
           K+ F  LLV GP  +P   Y   + ++  GL  GAT  +  + + L HI  +G VG
Sbjct: 708 KARFPKLLVDGPYGAPAQDYREYDVLLLIGLGIGATPLISIVKDVLNHIQGEGSVG 763


>01_01_0623 + 4672581-4673413,4674274-4674389,4674694-4674902,
            4675953-4676072,4676185-4676313,4676394-4676442,
            4676899-4676970,4677574-4677707,4677798-4677915,
            4678332-4678541,4678630-4678942,4679539-4679632,
            4679854-4679962,4680243-4680514,4680597-4680724,
            4680832-4681066,4681570-4681758,4681845-4682128,
            4682218-4682398,4682486-4682728,4682904-4682986,
            4683119-4683227,4687996-4688091,4688675-4688764,
            4688881-4689129,4689233-4689412,4690179-4690250,
            4691385-4691474,4691605-4691705,4691794-4691959
          Length = 1757

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 209  ISLEKLVPAWDSNTGASLNTNEPDGL 132
            + + K V AW++ TG   +  EP GL
Sbjct: 1465 VGITKSVEAWNTQTGMKSSLREPSGL 1490


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,417,460
Number of Sequences: 37544
Number of extensions: 305497
Number of successful extensions: 624
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)