Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5429
(569 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0740 + 6243517-6243526,6244822-6245323,6245415-6245496,624... 279 1e-75
03_02_0897 - 12239375-12239458,12240035-12240116,12240213-122407... 267 5e-72
05_01_0490 + 4083768-4083775,4083845-4084336,4084441-4084522,408... 257 5e-69
10_08_0141 + 15159160-15159306,15159708-15159815,15159958-151600... 31 0.65
06_01_0955 - 7352961-7353323,7354186-7354458,7354591-7355001,735... 31 0.85
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 30 1.5
07_03_0011 + 12370624-12370684,12372573-12372718,12372793-123731... 28 6.0
12_02_0957 + 24807261-24807311,24807436-24807773,24808727-248089... 27 8.0
11_05_0015 + 18403367-18403729,18404500-18404565,18405121-184052... 27 8.0
06_03_0804 + 24761974-24763196,24763674-24764019 27 8.0
05_01_0378 + 2970528-2971008,2971961-2972036,2972108-2972253,297... 27 8.0
03_02_0650 + 10174905-10175000,10175321-10175376,10175467-101755... 27 8.0
02_05_0844 - 32144417-32144764,32145588-32145686,32146218-321464... 27 8.0
>11_01_0740 +
6243517-6243526,6244822-6245323,6245415-6245496,
6245741-6245821
Length = 224
Score = 279 bits (683), Expect = 1e-75
Identities = 128/175 (73%), Positives = 144/175 (82%)
Frame = +1
Query: 19 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 198
MGRRPARCYR KNKPYPKSR+CRGVPDPKIRI+D+G K+ VD+FP CVHLVS E E +
Sbjct: 1 MGRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPYCVHLVSWEKENV 60
Query: 199 SSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 378
SSEALEA RI CNKY+ KN GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFG
Sbjct: 61 SSEALEAARIACNKYMTKNAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
Query: 379 KPQGTVTRVRIGQAIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKEVGFHK 543
KPQGT RV IGQ ++SVR + EALRRAKFKFPGRQKI S++ GF K
Sbjct: 121 KPQGTCARVDIGQVLLSVRCKESNAKHAEEALRRAKFKFPGRQKIIHSRKWGFTK 175
>03_02_0897 -
12239375-12239458,12240035-12240116,12240213-12240714,
12241150-12241303,12241458-12241629,12242237-12242443,
12242926-12243323
Length = 532
Score = 267 bits (654), Expect = 5e-72
Identities = 121/169 (71%), Positives = 138/169 (81%)
Frame = +1
Query: 31 PARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEA 210
P RCYR KNKPYPKSR+CRGVPDPKIRIFD+G+K+ + DDFPLCVHLVS E E +SSEA
Sbjct: 312 PVRCYRQIKNKPYPKSRYCRGVPDPKIRIFDVGQKKRSADDFPLCVHLVSWEKENVSSEA 371
Query: 211 LEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQG 390
LEA RI CNKY+ K+ GKD FH+R+ HP+HV+RINKMLSCAGADRLQTGMRGAFGKP G
Sbjct: 372 LEAARIACNKYMAKHAGKDAFHLRVCAHPYHVLRINKMLSCAGADRLQTGMRGAFGKPTG 431
Query: 391 TVTRVRIGQAIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKEVGF 537
T RVRIGQ ++SVR D A EALRRAKFKFPGRQ++ S + GF
Sbjct: 432 TCARVRIGQVLLSVRCRDANAAHAQEALRRAKFKFPGRQRVIFSAKWGF 480
>05_01_0490 +
4083768-4083775,4083845-4084336,4084441-4084522,
4086671-4087357,4087555-4087813,4088435-4088558,
4089474-4089564
Length = 580
Score = 257 bits (629), Expect = 5e-69
Identities = 118/168 (70%), Positives = 135/168 (80%)
Frame = +1
Query: 40 CYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEA 219
CYR KNKPYPKSR+CRGVPDPKIRI+D+G K+ VD+F CVHLVS E E ++SEALEA
Sbjct: 4 CYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFSHCVHLVSWEKENVTSEALEA 63
Query: 220 GRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVT 399
RI CNKY+ K+ GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT
Sbjct: 64 ARIACNKYMTKSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCA 123
Query: 400 RVRIGQAIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKEVGFHK 543
RV IGQ ++SVR EALRRAKFKFPGRQKI S++ GF K
Sbjct: 124 RVDIGQVLLSVRCKPNNAVHASEALRRAKFKFPGRQKIIESRKWGFTK 171
>10_08_0141 +
15159160-15159306,15159708-15159815,15159958-15160006,
15160067-15160182,15160358-15160399,15161026-15161442,
15162356-15162509,15162911-15162975,15163793-15163870,
15163951-15164061,15164227-15164271,15164677-15164850,
15165383-15166335,15166471-15166681,15167037-15167196,
15168786-15169174
Length = 1072
Score = 31.1 bits (67), Expect = 0.65
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +1
Query: 142 TVDDFPLC-VHLVSDEYEQLSSEALEAGRICCNKYLVKNCG 261
T D P C +HL SD Y S E ++AG+ C L K G
Sbjct: 587 TTDWNPRCDIHLKSDGYTNYSLETVQAGKQQCKAALQKELG 627
>06_01_0955 -
7352961-7353323,7354186-7354458,7354591-7355001,
7355604-7355684
Length = 375
Score = 30.7 bits (66), Expect = 0.85
Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 5/87 (5%)
Frame = +1
Query: 301 HVIRINKMLSCAGADRLQTGMRGAF---GKPQGTVTRVRIGQAIMSVRSSD--RWKAQVI 465
H+ RI + GA + + A+ G P TR+ QA+ SS W++QV
Sbjct: 107 HLFRILNTFTFKGASNHKGDILPAYHIYGAPGSYYTRLFPPQAVHLFHSSLSLHWRSQVP 166
Query: 466 EALRRAKFKFPGRQKIYVSKEVGFHKV 546
E L + + + IY++K H V
Sbjct: 167 EQLNGKQKSYLNEENIYITKTTPLHVV 193
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 29.9 bits (64), Expect = 1.5
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = -1
Query: 422 MACPMRTRVTVP*GLPNAPRIPVWSLSAPAH 330
++CP+ + VP LP++P P++S ++P +
Sbjct: 1625 LSCPLTSPSYVPTSLPHSPTSPIYSATSPIY 1655
>07_03_0011 +
12370624-12370684,12372573-12372718,12372793-12373129,
12374323-12374452,12375346-12375406,12375572-12375618,
12376873-12376950,12377195-12377345,12377495-12377558,
12377735-12377893,12378007-12378128,12378952-12378981,
12379050-12379124,12379563-12379644,12379809-12379938,
12381417-12382164,12382833-12383054,12383127-12383276,
12384851-12384904,12384985-12385058,12386130-12386204,
12386365-12386584
Length = 1071
Score = 27.9 bits (59), Expect = 6.0
Identities = 17/57 (29%), Positives = 25/57 (43%)
Frame = +2
Query: 11 RSPWGAGQQDATGTAKINRIRNRGSVGVYLIPRSVSSIWVRRERPLTTFHCACTWCP 181
R+ A Q +TGT K + R G + L + V ++ P+ F AC W P
Sbjct: 199 RASKSAWSQSSTGTRKWMQYRPAGETSLTLPCQGVLNLIATGPTPMDVF--ACAWSP 253
>12_02_0957 +
24807261-24807311,24807436-24807773,24808727-24808927,
24809024-24809069,24809284-24809600,24809949-24810072,
24810465-24810537,24810968-24811173,24811384-24811651,
24811780-24811877,24812116-24812379
Length = 661
Score = 27.5 bits (58), Expect = 8.0
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -1
Query: 248 TRYLLQQIRPASKASELSCSYSSDTKCTHSGKSS 147
+R+ ++ P+ ELSC ++T C H G S
Sbjct: 85 SRFKVRIFNPSGCEKELSCVMMNNTPCGHEGSMS 118
>11_05_0015 +
18403367-18403729,18404500-18404565,18405121-18405234,
18406109-18406297,18406335-18406667,18406708-18406743,
18407806-18407919,18408506-18408999,18409293-18409716
Length = 710
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Frame = +1
Query: 331 CAGADRLQTGMRGAFGKPQG---TVTRVRIGQAI 423
C+GA + + RG G+P+G V+R+R G A+
Sbjct: 52 CSGATKPECYARGVMGQPRGRLPAVSRIRRGAAL 85
>06_03_0804 + 24761974-24763196,24763674-24764019
Length = 522
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +2
Query: 461 SSRLCAVPSSSSPDVKRSTYQKKWGFTK 544
SSRLCA +PD + Y +WGF K
Sbjct: 391 SSRLCA----RNPDEPETDYSNEWGFEK 414
>05_01_0378 +
2970528-2971008,2971961-2972036,2972108-2972253,
2972300-2972817
Length = 406
Score = 27.5 bits (58), Expect = 8.0
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +3
Query: 321 NVIMRWS**APDWDAWCVWQASGYCNTCSHWT 416
NV+ RW P AWC + S + + CS W+
Sbjct: 342 NVLGRWGH-GPVPGAWCSGRKSWFSDPCSQWS 372
>03_02_0650 +
10174905-10175000,10175321-10175376,10175467-10175540,
10176215-10176753,10176845-10177186,10177520-10177879,
10177982-10178193,10178881-10179169,10179469-10180152
Length = 883
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 449 GRHRSSRLCAVPSSSSPDVKRSTYQKKWGF 538
G+ RSSRL PS+ D KR ++ W F
Sbjct: 813 GKKRSSRLPEAPSNMFDDSKRGLPKEGWTF 842
>02_05_0844 -
32144417-32144764,32145588-32145686,32146218-32146410,
32147049-32147107,32147189-32147263,32147557-32147670,
32147776-32147895,32148204-32148216,32148421-32148512,
32149078-32149164,32149254-32149328,32149630-32149680,
32149852-32149947,32150135-32150221,32150312-32150368,
32150475-32150600,32150709-32150949,32151028-32151114,
32151260-32151637,32152847-32153187
Length = 912
Score = 27.5 bits (58), Expect = 8.0
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -2
Query: 160 VESRQRSLSSYPNRRYGSWDQVHPDRTSISDTVYFCSTG 44
+ S + + S GSW H D +++ DT+ CS+G
Sbjct: 758 MNSSNQQIGSPSEEDLGSWGH-HSDPSTVPDTILQCSSG 795
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,131,470
Number of Sequences: 37544
Number of extensions: 421407
Number of successful extensions: 1197
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1197
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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