Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5428
         (610 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC5H10.13c |gmh2||alpha-1,2-galactosyltransferase Gmh2 |Schizo...    27   1.6  
SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces pombe...    27   2.8  
SPAC1786.01c ||SPAC31G5.20c|triacylglycerol lipase|Schizosacchar...    26   5.0  
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   6.5  
SPBC887.10 |mcs4||two-component response regulator |Schizosaccha...    25   8.7  

>SPAC5H10.13c |gmh2||alpha-1,2-galactosyltransferase Gmh2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 346

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 76  VDVISKPTLVSHAVIAPILRHSVATPFVTH 165
           VD++SK   +    IAP+L  ++ TP V H
Sbjct: 36  VDLVSKVNQLYDQQIAPMLSDAIGTPSVNH 65


>SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 20/65 (30%), Positives = 27/65 (41%)
 Frame = -3

Query: 542 RPLKSPEYPKCATGAVQIAEWARGAAAKGVAISWDTIAGSEITSTRD*CDTAAGAVCRTG 363
           +PLK      C    +Q A       A G  ++W   +   I ST+   D AA A+  TG
Sbjct: 42  QPLKGARIAGCLHMTIQTAVLIETLVALGAEVTW---SSCNIYSTQ---DHAAAAIAATG 95

Query: 362 VTTAA 348
           V   A
Sbjct: 96  VPVFA 100


>SPAC1786.01c ||SPAC31G5.20c|triacylglycerol
           lipase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +1

Query: 226 DVHSSPAVVTHAISPLSAVWT 288
           DVHS P ++ +  SP + +W+
Sbjct: 372 DVHSPPKLINYLTSPDTVIWS 392


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1060

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = -2

Query: 168 SMSYKGGSHGVSQNRGNHSMGHQSRLRNNVNASLMGNS*RSNQS 37
           +M++  G  G+S     ++    S+L+NN N S+  ++ R   S
Sbjct: 104 AMNFNEGPTGISSIASKNNSSITSKLQNNSNLSVTSSANRGRTS 147


>SPBC887.10 |mcs4||two-component response regulator
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 522

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/41 (24%), Positives = 22/41 (53%)
 Frame = +1

Query: 376 TAPAAVSHQSRVDVISEPAIVSHEIATPLAAAPLAHSAIWT 498
           T   ++   +R D  +   +   E+ATP  +  ++HS+++T
Sbjct: 234 TRKNSIGMSTRSDESTAEKLAKAEVATPTNSRSISHSSLYT 274


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,235,872
Number of Sequences: 5004
Number of extensions: 40757
Number of successful extensions: 119
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)