Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5428
         (610 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M93256-1|AAB59181.1| 1110|Caenorhabditis elegans tra-1 protein.        35   0.040
AL117202-5|CAB61040.2| 1109|Caenorhabditis elegans Hypothetical ...    35   0.040
U53154-6|AAC25855.3|  357|Caenorhabditis elegans Nuclear hormone...    29   3.4  
AY204192-1|AAO39196.1|  357|Caenorhabditis elegans nuclear recep...    29   3.4  
AY204191-1|AAO39195.1|  357|Caenorhabditis elegans nuclear recep...    29   3.4  
U80836-13|AAB37897.1|  190|Caenorhabditis elegans Hypothetical p...    28   4.5  
U64854-3|AAB18315.2|  304|Caenorhabditis elegans Hypothetical pr...    28   4.5  

>M93256-1|AAB59181.1| 1110|Caenorhabditis elegans tra-1 protein.
          Length = 1110

 Score = 35.1 bits (77), Expect = 0.040
 Identities = 27/99 (27%), Positives = 42/99 (42%), Gaps = 1/99 (1%)
 Frame = +1

Query: 214 QSRVDVHSSPAVVTHAISPLSAVWTGATYGAHSI-SHGHLLKKRSLAAVVTPVLHTAPAA 390
           Q +  V    A+  HA+     V      GA S+ S    L   S A  V  +L T P  
Sbjct: 486 QMQAQVQHQAAMQAHAMQQAQMVLQNNLLGAQSLLSPFSPLLPPSRAPNVMAMLQTPPTP 545

Query: 391 VSHQSRVDVISEPAIVSHEIATPLAAAPLAHSAIWTAPV 507
            S     D+++  A ++  ++ P A APL  + +  +PV
Sbjct: 546 TSVAPMFDIMTSRAPMAPVVSAPTAPAPLVPAPVPASPV 584


>AL117202-5|CAB61040.2| 1109|Caenorhabditis elegans Hypothetical
           protein Y47D3A.6a protein.
          Length = 1109

 Score = 35.1 bits (77), Expect = 0.040
 Identities = 27/99 (27%), Positives = 42/99 (42%), Gaps = 1/99 (1%)
 Frame = +1

Query: 214 QSRVDVHSSPAVVTHAISPLSAVWTGATYGAHSI-SHGHLLKKRSLAAVVTPVLHTAPAA 390
           Q +  V    A+  HA+     V      GA S+ S    L   S A  V  +L T P  
Sbjct: 485 QMQAQVQHQAAMQAHAMQQAQMVLQNNLLGAQSLLSPFSPLLPPSRAPNVMAMLQTPPTP 544

Query: 391 VSHQSRVDVISEPAIVSHEIATPLAAAPLAHSAIWTAPV 507
            S     D+++  A ++  ++ P A APL  + +  +PV
Sbjct: 545 TSVAPMFDIMTSRAPMAPVVSAPTAPAPLVPAPVPASPV 583


>U53154-6|AAC25855.3|  357|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 107 protein.
          Length = 357

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 12/41 (29%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +3

Query: 264 FSSLCCLDRCNIWCSFYLSWTLVEETFFSC-CSDSSSAHRP 383
           F+ LC +D+  ++ +FY  W+++E T  +   +DS + + P
Sbjct: 168 FNQLCKMDKRILFNNFYSKWSILEVTMLATKYNDSKNFYSP 208


>AY204192-1|AAO39196.1|  357|Caenorhabditis elegans nuclear receptor
           NHR-107 protein.
          Length = 357

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 12/41 (29%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +3

Query: 264 FSSLCCLDRCNIWCSFYLSWTLVEETFFSC-CSDSSSAHRP 383
           F+ LC +D+  ++ +FY  W+++E T  +   +DS + + P
Sbjct: 168 FNQLCKMDKRILFNNFYSKWSILEVTMLATKYNDSKNFYSP 208


>AY204191-1|AAO39195.1|  357|Caenorhabditis elegans nuclear receptor
           NHR-107 protein.
          Length = 357

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 12/41 (29%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +3

Query: 264 FSSLCCLDRCNIWCSFYLSWTLVEETFFSC-CSDSSSAHRP 383
           F+ LC +D+  ++ +FY  W+++E T  +   +DS + + P
Sbjct: 168 FNQLCKMDKRILFNNFYSKWSILEVTMLATKYNDSKNFYSP 208


>U80836-13|AAB37897.1|  190|Caenorhabditis elegans Hypothetical
           protein B0432.11 protein.
          Length = 190

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -3

Query: 539 PLKSPEYPKCATGAVQIAEWARG 471
           P+K PE  K  TG V   +W RG
Sbjct: 87  PVKEPESDKSGTGPVNSVKWLRG 109


>U64854-3|AAB18315.2|  304|Caenorhabditis elegans Hypothetical
           protein K11C4.2 protein.
          Length = 304

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = +3

Query: 303 CSFYLSWTLVEETFFSCCSDSSSAHRPRRRVTSIS 407
           C   ++W L++     C SD    H PR  V  I+
Sbjct: 244 CIDMVAWNLLDAAHIDCSSDEGHVHLPRNIVAVIA 278


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,576,327
Number of Sequences: 27780
Number of extensions: 237507
Number of successful extensions: 734
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)