Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5426
(383 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein L32|Sch... 88 4e-19
SPBC16C6.11 |rpl3201|rpl32-1|60S ribosomal protein L32|Schizosac... 86 2e-18
SPAC1250.04c |atl1||alkyltransferase-like protein Atl1|Schizosac... 29 0.19
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom... 27 0.76
SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces pombe... 27 1.0
SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 1.3
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc... 26 2.3
SPBC336.10c |tif512||translation initiation factor|Schizosacchar... 25 4.1
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p... 25 4.1
SPAC26H5.10c |tif51||translation initiation factor eIF5A|Schizos... 25 4.1
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr... 25 5.4
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ... 24 7.1
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 24 7.1
SPAC1F7.10 |||hydantoin racemase family |Schizosaccharomyces pom... 24 7.1
SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr 1|... 24 9.4
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi... 24 9.4
SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces pom... 24 9.4
SPAC3G9.09c |tif211||translation initiation factor eIF2 alpha su... 24 9.4
>SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein
L32|Schizosaccharomyces pombe|chr 1|||Manual
Length = 127
Score = 88.2 bits (209), Expect = 4e-19
Identities = 39/60 (65%), Positives = 47/60 (78%)
Frame = +3
Query: 78 IVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRPYAP 257
I+KKRTK F RHQSDR+ ++ +WRKPRGID+ VRRRF+G MP IGYG+NKKTR P
Sbjct: 6 IIKKRTKPFKRHQSDRFKRVGESWRKPRGIDSCVRRRFRGTISMPKIGYGNNKKTRYCMP 65
Score = 39.1 bits (87), Expect = 2e-04
Identities = 15/33 (45%), Positives = 24/33 (72%)
Frame = +1
Query: 247 HMLPNGFRKVLVHNVKELEILMMQNRKHCAEIA 345
+ +PNG + LV NV ++E+L+M N+ + AEIA
Sbjct: 62 YCMPNGLKAFLVRNVSDVELLLMHNKTYAAEIA 94
>SPBC16C6.11 |rpl3201|rpl32-1|60S ribosomal protein
L32|Schizosaccharomyces pombe|chr 2|||Manual
Length = 127
Score = 85.8 bits (203), Expect = 2e-18
Identities = 39/60 (65%), Positives = 46/60 (76%)
Frame = +3
Query: 78 IVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRPYAP 257
IVKKRTK F RHQSD + ++ +WRKPRGID+ VRRRF+G MP IGYG+NKKTR P
Sbjct: 6 IVKKRTKPFKRHQSDLFKRVGESWRKPRGIDSCVRRRFRGTISMPKIGYGNNKKTRYCMP 65
Score = 39.1 bits (87), Expect = 2e-04
Identities = 15/33 (45%), Positives = 24/33 (72%)
Frame = +1
Query: 247 HMLPNGFRKVLVHNVKELEILMMQNRKHCAEIA 345
+ +PNG + LV NV ++E+L+M N+ + AEIA
Sbjct: 62 YCMPNGLKAFLVRNVSDVELLLMHNKTYAAEIA 94
>SPAC1250.04c |atl1||alkyltransferase-like protein
Atl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 108
Score = 29.5 bits (63), Expect = 0.19
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +2
Query: 5 HRVVHCR--VFKRNIQDGYKTCLQADNRQKEDEEIYQASIG 121
HRV++ R + KR+I G + Q D ++E EIYQ S+G
Sbjct: 57 HRVINSRGTISKRDISAGEQR--QKDRLEEEGVEIYQTSLG 95
>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 558
Score = 27.5 bits (58), Expect = 0.76
Identities = 13/23 (56%), Positives = 17/23 (73%), Gaps = 2/23 (8%)
Frame = -1
Query: 152 TPIPLKFV--IAIRLMPDKSLRP 90
TP+P+KFV IA+ MP +LRP
Sbjct: 427 TPVPIKFVADIAMHSMPRVALRP 449
>SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 377
Score = 27.1 bits (57), Expect = 1.0
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 300 GNLDDAKQEALRRDRSWVAFSKKPET 377
GN DD KQEA D+S + + P+T
Sbjct: 170 GNNDDQKQEAYEVDKSNMMYKNIPQT 195
>SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 689
Score = 26.6 bits (56), Expect = 1.3
Identities = 12/49 (24%), Positives = 26/49 (53%)
Frame = -3
Query: 378 RFPASWKRPPMSDLCAVLPVLHHQDFQLFNIVN*DLTESIWEHMDGSSC 232
RF ++W++ DL A +PV+ + Q + + ++I+ + S+C
Sbjct: 59 RFHSTWQKKKHDDLTATVPVIDFRKNQKLTSIVVNAIQAIYWYARRSNC 107
>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
Thi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 25.8 bits (54), Expect = 2.3
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 200 ILDAQHWLRFQQEDPSICSQMDSVRS*FTMLKSWKS 307
I D+ +W PS SQ++SVR + L+ WKS
Sbjct: 460 ICDSLYW----NPSPSFESQVNSVRRIYARLELWKS 491
>SPBC336.10c |tif512||translation initiation
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 157
Score = 25.0 bits (52), Expect = 4.1
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = +2
Query: 38 NIQDGYKTCLQADNRQKEDEEIYQASIGS 124
NI DGY + D K+D + + +G+
Sbjct: 95 NIDDGYLNLMTTDGTTKDDVRLPEGELGN 123
>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1098
Score = 25.0 bits (52), Expect = 4.1
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +3
Query: 102 FIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 227
F H D YD+L NW++ ++ +RFK NI G
Sbjct: 822 FCVHTRDVYDELVPNWKETYQMEITNVKRFKLIIYQRNIHTG 863
>SPAC26H5.10c |tif51||translation initiation factor
eIF5A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 25.0 bits (52), Expect = 4.1
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = +2
Query: 38 NIQDGYKTCLQADNRQKEDEEIYQASIGS 124
NI DGY + D K+D + + +G+
Sbjct: 95 NIDDGYLNLMTTDGTTKDDVRLPEGELGN 123
>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 24.6 bits (51), Expect = 5.4
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = +3
Query: 69 RPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNI 218
R T VK+R K I+ S+ + KP G R R+ K Y +P +
Sbjct: 540 RETKVKRRRKARIQETSEESTVVNEPNEKPDGRSRRERK--KVNYALPGL 587
>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 24.2 bits (50), Expect = 7.1
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -2
Query: 349 HERSLRSASCFASSRFPAL*H 287
HER +R + S+RFP L H
Sbjct: 451 HERHIRLLVSYLSNRFPILLH 471
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 24.2 bits (50), Expect = 7.1
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = -1
Query: 200 LTLEPPADSVVNTSRFTPIPLKFVIAIRLMPDKSLRPLFDDC--RPVN 63
L + P ++ T+RF P+PL ++ ++ SL P + C P+N
Sbjct: 569 LKVPPLVPLLIGTTRFFPVPL---VSSQIAIISSLGPSYSGCFQGPIN 613
>SPAC1F7.10 |||hydantoin racemase family |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 238
Score = 24.2 bits (50), Expect = 7.1
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = -1
Query: 104 KSLRPLFDDCRPVNRSYSHLVC 39
+S++ + DDC P N +L C
Sbjct: 17 ESVKSVLDDCTPPNVQLEYLTC 38
>SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 23.8 bits (49), Expect = 9.4
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +1
Query: 142 GIGVNLEVLTTESAGGS 192
G+G NL+ T AGGS
Sbjct: 327 GVGSNLQATVTNGAGGS 343
>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 306
Score = 23.8 bits (49), Expect = 9.4
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = +1
Query: 211 PTLVTVPTRRPVHMLPNGFRKVLVHNVKELEILMMQNRKHCAEIA 345
P V + V++L N F+ +L+ V + L + + HCA ++
Sbjct: 138 PEAVISKEKHLVYIL-NSFKPILLKLVSIIRFLCLTMKGHCATVS 181
>SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 163
Score = 23.8 bits (49), Expect = 9.4
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -1
Query: 173 VVNTSRFTPIPLKFVIAIRLMP 108
++ R P+PL F I++ LMP
Sbjct: 48 LIPKDRPVPLPLNFDISVHLMP 69
>SPAC3G9.09c |tif211||translation initiation factor eIF2 alpha
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 306
Score = 23.8 bits (49), Expect = 9.4
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 6/36 (16%)
Frame = -1
Query: 224 VTNVGHQVLTLEPPADSVVN------TSRFTPIPLK 135
++N H LEPP V+N + R TP P+K
Sbjct: 149 ISNPDHVFEGLEPPKSGVINDLLAQISRRLTPQPIK 184
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,629,849
Number of Sequences: 5004
Number of extensions: 31948
Number of successful extensions: 108
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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