Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5426
(383 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0630 + 19104678-19105463,19106169-19106348,19107775-191078... 99 1e-21
09_04_0633 - 19123930-19124009,19124240-19124344,19124453-191245... 94 3e-20
09_04_0632 - 19121654-19121783,19121910-19122091,19122752-19122841 94 3e-20
08_02_1315 + 26083856-26083945,26084093-26084226,26084753-260848... 68 2e-12
11_06_0344 + 22540436-22540737,22541304-22543545 27 3.8
12_02_1109 + 26151421-26153601 27 5.1
08_02_1426 + 27009720-27010787,27011846-27012517,27012999-270137... 27 5.1
10_08_0961 + 21869612-21869773,21869869-21869956,21870047-218702... 27 6.7
12_02_0388 - 18486957-18487016,18487286-18489418,18489985-184904... 26 8.9
10_06_0115 - 10930295-10930777 26 8.9
05_01_0454 + 3610608-3613136 26 8.9
>09_04_0630 +
19104678-19105463,19106169-19106348,19107775-19107864,
19108777-19108958,19109968-19109974,19111763-19111833,
19112188-19112224,19112433-19112603
Length = 507
Score = 98.7 bits (235), Expect = 1e-21
Identities = 46/74 (62%), Positives = 57/74 (77%)
Frame = +3
Query: 36 ETYKMAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPN 215
+TY+M + P+ IVKKR K+F R SDRY LK +WR+P+GID+RVRR+FKG LMPN
Sbjct: 319 DTYEMVV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPN 377
Query: 216 IGYGSNKKTRPYAP 257
IGYGS+KKTR Y P
Sbjct: 378 IGYGSDKKTRHYLP 391
Score = 43.6 bits (98), Expect = 5e-05
Identities = 18/26 (69%), Positives = 21/26 (80%)
Frame = +1
Query: 247 HMLPNGFRKVLVHNVKELEILMMQNR 324
H LPN F+K +VHNV ELE+LMM NR
Sbjct: 388 HYLPNKFKKFVVHNVSELELLMMHNR 413
>09_04_0633 -
19123930-19124009,19124240-19124344,19124453-19124543,
19124647-19124709,19126318-19126368,19126878-19126962,
19127102-19127283,19128493-19128582
Length = 248
Score = 94.3 bits (224), Expect = 3e-20
Identities = 45/70 (64%), Positives = 54/70 (77%)
Frame = +3
Query: 48 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 227
MA+ P+ IVKKR K+F R SDRY LK +WR+P+GID+RVRR+FKG LMPNIGYG
Sbjct: 1 MAV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPNIGYG 59
Query: 228 SNKKTRPYAP 257
S+KKTR Y P
Sbjct: 60 SDKKTRHYLP 69
Score = 57.6 bits (133), Expect = 3e-09
Identities = 24/34 (70%), Positives = 28/34 (82%)
Frame = +1
Query: 247 HMLPNGFRKVLVHNVKELEILMMQNRKHCAEIAH 348
H LPN F+K +VHNV ELE+LMM NR +CAEIAH
Sbjct: 66 HYLPNKFKKFVVHNVSELELLMMHNRTYCAEIAH 99
>09_04_0632 - 19121654-19121783,19121910-19122091,19122752-19122841
Length = 133
Score = 94.3 bits (224), Expect = 3e-20
Identities = 45/70 (64%), Positives = 54/70 (77%)
Frame = +3
Query: 48 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 227
MA+ P+ IVKKR K+F R SDRY LK +WR+P+GID+RVRR+FKG LMPNIGYG
Sbjct: 1 MAV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPNIGYG 59
Query: 228 SNKKTRPYAP 257
S+KKTR Y P
Sbjct: 60 SDKKTRHYLP 69
Score = 57.6 bits (133), Expect = 3e-09
Identities = 24/34 (70%), Positives = 28/34 (82%)
Frame = +1
Query: 247 HMLPNGFRKVLVHNVKELEILMMQNRKHCAEIAH 348
H LPN F+K +VHNV ELE+LMM NR +CAEIAH
Sbjct: 66 HYLPNKFKKFVVHNVSELELLMMHNRMYCAEIAH 99
>08_02_1315 +
26083856-26083945,26084093-26084226,26084753-26084819,
26085011-26085192,26085315-26085444
Length = 200
Score = 68.1 bits (159), Expect = 2e-12
Identities = 28/38 (73%), Positives = 34/38 (89%)
Frame = +3
Query: 144 NWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRPYAP 257
+WR+P+GID+RVRR+FKG LMPNIGYGS+KKTR Y P
Sbjct: 99 SWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLP 136
Score = 57.6 bits (133), Expect = 3e-09
Identities = 24/34 (70%), Positives = 28/34 (82%)
Frame = +1
Query: 247 HMLPNGFRKVLVHNVKELEILMMQNRKHCAEIAH 348
H LPN F+K +VHNV ELE+LMM NR +CAEIAH
Sbjct: 133 HYLPNKFKKFVVHNVSELELLMMHNRTYCAEIAH 166
Score = 29.9 bits (64), Expect = 0.72
Identities = 17/31 (54%), Positives = 20/31 (64%)
Frame = +3
Query: 48 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLK 140
MA+ P+ IVKKR K+F R SDRY LK
Sbjct: 1 MAV-PLLTKKIVKKRVKQFKRPHSDRYLCLK 30
>11_06_0344 + 22540436-22540737,22541304-22543545
Length = 847
Score = 27.5 bits (58), Expect = 3.8
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = +1
Query: 247 HMLPNGFRKVLVHNVKELEILMMQNRKHCAEIAHGWPFP 363
H PNG LVH VK L + + + +AHGWP P
Sbjct: 147 HPWPNG----LVHEVKPLGAT--DSERLFSAVAHGWPRP 179
>12_02_1109 + 26151421-26153601
Length = 726
Score = 27.1 bits (57), Expect = 5.1
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +2
Query: 14 VHCRVFKRNIQDGYKTCLQADNR 82
V CR+F+RN+ K C + DN+
Sbjct: 673 VACRMFRRNLIPDVKLCQKVDNQ 695
>08_02_1426 + 27009720-27010787,27011846-27012517,27012999-27013793,
27014914-27014943,27018095-27019987
Length = 1485
Score = 27.1 bits (57), Expect = 5.1
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +2
Query: 5 HRVVHCRVFKRNIQDGYKTCLQADNRQKEDEEIYQA 112
H + + R+ +R I +GY + +N +KE EE + A
Sbjct: 963 HDIRYGRLLRRWIAEGYSRAKRNNNAEKEAEEQFTA 998
>10_08_0961 +
21869612-21869773,21869869-21869956,21870047-21870277,
21870371-21870538,21870808-21871001,21871151-21871234,
21871315-21871434,21871621-21871714,21871813-21871973,
21873237-21873313,21873738-21873932,21874487-21874559,
21874635-21874721,21874906-21875043,21875181-21875383,
21875469-21875631,21875861-21875992
Length = 789
Score = 26.6 bits (56), Expect = 6.7
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Frame = +1
Query: 10 RGSLSRF*KKHTRWL*DLFTGRQSSKRGRRD---LSGINRIAMTNLRGIGVNLEVLTTES 180
R ++S +KH ++L ++ + + R + LSG +M L L VL ++
Sbjct: 181 RQAVSIINRKHEKYLDEIEAFKNNQSRELHEVKCLSGELEESMAELEESRRKLAVLQLQT 240
Query: 181 AGGSRVNT*CP 213
GGS +NT P
Sbjct: 241 GGGSLMNTSAP 251
>12_02_0388 -
18486957-18487016,18487286-18489418,18489985-18490484,
18490728-18490899
Length = 954
Score = 26.2 bits (55), Expect = 8.9
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +3
Query: 108 RHQSDRYDKLKRNWRKPRGIDN 173
R + D +++K W K RG+D+
Sbjct: 933 RFEDDELEEIKARWNKDRGLDS 954
>10_06_0115 - 10930295-10930777
Length = 160
Score = 26.2 bits (55), Expect = 8.9
Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Frame = +1
Query: 229 PTRRPVHM--LPNGFRKVLVHNVKELEILM 312
P+R P+ + LP G R +HN KE +++
Sbjct: 4 PSRSPLELKPLPEGLRYAFLHNDKEAPVII 33
>05_01_0454 + 3610608-3613136
Length = 842
Score = 26.2 bits (55), Expect = 8.9
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +1
Query: 220 VTVPTRRPVHMLPNGFRKVLVH-NVKELEILMMQN 321
+ + R +H L GF K ++H +VK IL+ +N
Sbjct: 606 ICIGAARGLHYLHTGFAKSIIHRDVKSANILLDEN 640
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,980,821
Number of Sequences: 37544
Number of extensions: 220109
Number of successful extensions: 582
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 636799876
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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