Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5424
         (670 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0081 - 6608901-6609680,6610380-6610808,6610893-6610994,661...    28   7.7  
01_05_0677 - 24202037-24202444,24202499-24202795,24202960-242030...    28   7.7  

>02_02_0081 -
           6608901-6609680,6610380-6610808,6610893-6610994,
           6611114-6611429,6611624-6611806,6611909-6612030,
           6612181-6612251,6612732-6612921
          Length = 730

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = -3

Query: 485 YTTFHVTSHGNVL--KSILCPSPISKLPAHQFSAKSV 381
           Y T HV   G  +  K+   P+P + LP  Q+S  S+
Sbjct: 146 YCTVHVIHKGKAIQVKAAKAPAPFTTLPPKQYSQSSI 182


>01_05_0677 -
           24202037-24202444,24202499-24202795,24202960-24203009,
           24204534-24204589,24205751-24206040,24206100-24206488,
           24210578-24210818
          Length = 576

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/52 (23%), Positives = 33/52 (63%)
 Frame = -1

Query: 286 KNVIDMSIQIDLNIIVSFKEYGSKPALNKG*YLTCYLSKMSFRRVL*LPMEY 131
           +++ D+   + ++ IV+ K++ ++  + +  Y TC +S+  FRR+L + +++
Sbjct: 409 ESLYDLFKTVGIDRIVTLKQHYNEDLIRQF-YATCSISRRQFRRLLNIRLDF 459


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,530,787
Number of Sequences: 37544
Number of extensions: 305887
Number of successful extensions: 506
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 506
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)