Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5424
         (670 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016683-6|AAY55869.1|  130|Caenorhabditis elegans Hypothetical ...    27   9.1  
AF016443-3|AAC24281.1|  395|Caenorhabditis elegans Hypothetical ...    27   9.1  

>AF016683-6|AAY55869.1|  130|Caenorhabditis elegans Hypothetical
           protein K09F6.11 protein.
          Length = 130

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 483 YHVSCHVPRERAKKYPMSFSYF 418
           Y+++ HVP+ RAK  P+   YF
Sbjct: 44  YYMNAHVPQVRAKTCPVCLLYF 65


>AF016443-3|AAC24281.1|  395|Caenorhabditis elegans Hypothetical
           protein C17E7.7 protein.
          Length = 395

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = -1

Query: 232 KEYGSKPALNKG*YLTCYLSKMSFRRVL*LPMEY--KVNNSFF 110
           K++GS+P       LTC   KM FRRV+   +EY  K +N+ F
Sbjct: 60  KDFGSQPKQ----VLTCDACKMFFRRVVTEKLEYTCKCSNNCF 98


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,975,209
Number of Sequences: 27780
Number of extensions: 298799
Number of successful extensions: 551
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)