Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5423
         (702 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0915 - 29385926-29385952,29386069-29386285,29386367-293866...    31   0.89 
01_06_1675 + 39078774-39078890,39079607-39079723,39079950-390800...    29   3.6  
03_01_0185 - 1485023-1485733                                           28   8.3  
01_01_0092 + 722744-723459,723542-723711,723792-724885                 28   8.3  

>04_04_0915 -
           29385926-29385952,29386069-29386285,29386367-29386622,
           29386745-29387072,29387157-29387587,29388014-29388163,
           29388212-29388398,29388709-29388750,29389007-29389555,
           29389778-29390032
          Length = 813

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
 Frame = +2

Query: 29  DGSHVMPLKLKSPTSRNLSSELSKTMLVSFVR*LVNCSEKDNLEPCLHKYNTHICSLI-- 202
           D   +  L    P   + S+   K  L + +  L+N    D +  CLHK N+HI   +  
Sbjct: 207 DNCFIARLSSVLPVETDSSTNEPKEPLFAVI--LINMKTYDRIWDCLHKGNSHIVDTVWR 264

Query: 203 -VSRFNSTMSVTHKSSTDELND 265
             S+F   +++T   +T E+++
Sbjct: 265 YKSKFQLPIALTVAFATKEVDE 286


>01_06_1675 +
           39078774-39078890,39079607-39079723,39079950-39080006,
           39080340-39080417,39080553-39080597,39080872-39080931,
           39081149-39081271,39081850-39081927,39082056-39082125,
           39082612-39082719,39082962-39083095,39083177-39083247,
           39083384-39083432,39083507-39083557
          Length = 385

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -1

Query: 183 VLYLCKQGSRLSFSEQLTNYLTKLTNIV 100
           ++Y+CK   +  FS    N+LT++T I+
Sbjct: 42  LVYMCKVDGKFKFSPVSVNFLTEITKII 69


>03_01_0185 - 1485023-1485733
          Length = 236

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 292 TSRNQNTATPRLTRKVTVPIPTPNCI 369
           T  +  TAT   T +VTVP P PN +
Sbjct: 55  TMTSSATATSAKTTRVTVPTPAPNTV 80


>01_01_0092 + 722744-723459,723542-723711,723792-724885
          Length = 659

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 18/64 (28%), Positives = 32/64 (50%)
 Frame = -1

Query: 264 SFNSSVEDLWVTLIVELKRETIKLHICVLYLCKQGSRLSFSEQLTNYLTKLTNIVLDNSL 85
           ++ SS   +WVTL++    E +K   C++ LC+             Y  + T I +D ++
Sbjct: 270 NYYSSATQVWVTLVLVFAVEIVK---CIIVLCRFILAPLTVLTFLGYKYRKTRISID-AV 325

Query: 84  DKFL 73
           +KFL
Sbjct: 326 EKFL 329


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,046,340
Number of Sequences: 37544
Number of extensions: 313026
Number of successful extensions: 680
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)