Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5423
         (702 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ...    47   1e-05
AL110477-8|CAB76739.1| 1042|Caenorhabditis elegans Hypothetical ...    36   0.037
AF077540-8|AAC26310.2|  683|Caenorhabditis elegans Btb and math ...    32   0.35 
Z75710-7|CAN99690.1|  855|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z75710-6|CAB00028.1|  857|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z50177-3|CAA90545.2|  765|Caenorhabditis elegans Hypothetical pr...    29   4.3  
Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical pr...    27   9.8  
AF067610-1|AAC17538.2|  696|Caenorhabditis elegans Hypothetical ...    27   9.8  
AC006827-4|AAF60881.1|  579|Caenorhabditis elegans Hypothetical ...    27   9.8  

>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
           protein F21E9.1 protein.
          Length = 1170

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 28/90 (31%), Positives = 50/90 (55%), Gaps = 3/90 (3%)
 Frame = -1

Query: 528 LNSIHIYYQNVRGLRT--KVLEFSRNLLLCSYDVIILTETWLTDGILDSELFN-EHYTVW 358
           + +I+    NVRG+    K++           D+++LTET+L++ I+ S LFN  + +  
Sbjct: 314 IKNINFSLANVRGVSALPKIIMLKEFFASSDIDILLLTETFLSN-IVPSSLFNAPNMSFL 372

Query: 357 RRDRNSDLTGQSRGGGVLIATRKDLKVSLQ 268
           R DRN +L  +  GGGV +  +  L ++L+
Sbjct: 373 RLDRNPELHSKVSGGGVAVMHKSSLNITLR 402


>AL110477-8|CAB76739.1| 1042|Caenorhabditis elegans Hypothetical
           protein Y113G7B.12 protein.
          Length = 1042

 Score = 35.5 bits (78), Expect = 0.037
 Identities = 37/156 (23%), Positives = 71/156 (45%), Gaps = 7/156 (4%)
 Frame = -1

Query: 501 NVRGLRT--KVLEFSRNLLLCSYDVIILTETWLTDGILDSELFNEHYTVWRRDRNSDLTG 328
           NVR  +   K  +    L    Y +I +TE+WL + +  +   +   ++ R DR+  L  
Sbjct: 376 NVRSCKKLEKASQLCAKLHSNDYQIIAVTESWLQESVSSALFTSFGISIHRCDRDVALHT 435

Query: 327 QSRGGGVLIATRKDL---KVSLQPS--FNSSVEDLWVTLIVELKRETIKLHICVLYLCKQ 163
           ++ GGGV I  +  L   K+ +Q    +N    ++    ++         ++ V+Y    
Sbjct: 436 KNSGGGVAILFKPPLVVTKLDIQQEHHYNGHQSEVLACRVLNPDYPGASFNLVVVYRPPI 495

Query: 162 GSRLSFSEQLTNYLTKLTNIVLDNSLDKFLLVGDFN 55
             ++S   QL  +L+      L +S  +++L+GDFN
Sbjct: 496 NGKIS---QLIAHLSSF----LPSS--EYVLMGDFN 522


>AF077540-8|AAC26310.2|  683|Caenorhabditis elegans Btb and math
           domain containingprotein 47 protein.
          Length = 683

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 16/67 (23%), Positives = 33/67 (49%)
 Frame = +2

Query: 119 VR*LVNCSEKDNLEPCLHKYNTHICSLIVSRFNSTMSVTHKSSTDELNDGCKLTFKSLRV 298
           V+ ++  ++K   +  L K    + ++   R ++  ++  +   DEL   CKL FK+ ++
Sbjct: 82  VQKILPLAQKFGSKTVLQKCERFLITISTVRLSTKWNLAKQYGLDELQAHCKLEFKTAQI 141

Query: 299 AIKTPPP 319
             K P P
Sbjct: 142 VRKNPQP 148


>Z75710-7|CAN99690.1|  855|Caenorhabditis elegans Hypothetical
           protein D1081.7b protein.
          Length = 855

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/50 (26%), Positives = 29/50 (58%)
 Frame = -1

Query: 294 RKDLKVSLQPSFNSSVEDLWVTLIVELKRETIKLHICVLYLCKQGSRLSF 145
           R+++ V    +  + +  + V  IVEL+RET++     +Y+ +QG+ + +
Sbjct: 545 REEMDVEKVATMGNILRAVMVAPIVELQRETVRTGSAAVYVYRQGAEVRY 594


>Z75710-6|CAB00028.1|  857|Caenorhabditis elegans Hypothetical
           protein D1081.7a protein.
          Length = 857

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/50 (26%), Positives = 29/50 (58%)
 Frame = -1

Query: 294 RKDLKVSLQPSFNSSVEDLWVTLIVELKRETIKLHICVLYLCKQGSRLSF 145
           R+++ V    +  + +  + V  IVEL+RET++     +Y+ +QG+ + +
Sbjct: 547 REEMDVEKVATMGNILRAVMVAPIVELQRETVRTGSAAVYVYRQGAEVRY 596


>Z50177-3|CAA90545.2|  765|Caenorhabditis elegans Hypothetical
           protein F46G10.5 protein.
          Length = 765

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
 Frame = -1

Query: 531 FLNSIHIYYQNVRGLR-TKVLEFSRNLLLCS--YDVIILTETWLTDGILDSELFNEH 370
           F+ S  IY  N  G   T ++ F+  L L    Y VI+LT TWL+D  L  +  +EH
Sbjct: 235 FITSFAIY--NFFGYSITPLIIFTPFLALIHGYYTVIMLTHTWLSDSELRRDSRDEH 289


>Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical protein
            F54B3.1b protein.
          Length = 3394

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -1

Query: 252  SVEDLWVTLIVELKRETIKLHICVLY 175
            SV D W+ + V+ K   I +H C  Y
Sbjct: 1750 SVADFWIIISVDYKDHQISVHFCQRY 1775


>Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical protein
            F54B3.1a protein.
          Length = 3396

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -1

Query: 252  SVEDLWVTLIVELKRETIKLHICVLY 175
            SV D W+ + V+ K   I +H C  Y
Sbjct: 1750 SVADFWIIISVDYKDHQISVHFCQRY 1775


>AF067610-1|AAC17538.2|  696|Caenorhabditis elegans Hypothetical
           protein F41A4.1 protein.
          Length = 696

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +2

Query: 83  SSELSKTMLVSFVR*LVNCSEKDNLEPCLHKYNTHICSLIVSRFNS 220
           SS + KT  +S    L  C ++ +    LH  +T +C L     NS
Sbjct: 126 SSFIIKTFSISMEECLSQCQKESSCRAALHNNDTSLCQLSRVSLNS 171


>AC006827-4|AAF60881.1|  579|Caenorhabditis elegans Hypothetical
           protein Y81B9A.1 protein.
          Length = 579

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -1

Query: 621 VPGLSVTTLELNQPNAWSAFR*TIQRTKVIFLNSIH 514
           + G++     + Q  AW   R  +QRT+ + LN+ H
Sbjct: 72  IGGVTPEAQTMQQETAWGFRRECLQRTRALILNTTH 107


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,418,884
Number of Sequences: 27780
Number of extensions: 302947
Number of successful extensions: 757
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 757
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)