Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5422
         (508 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|ch...    26   3.7  
SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr 2|||...    26   3.7  
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone...    26   3.7  
SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb...    25   6.5  

>SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 794

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = -3

Query: 365 LGK*WKFMYLFLLN--CLIESLSDKING 288
           LGK W ++ LFL N   +   L D+ING
Sbjct: 626 LGKIWSYLILFLANDPVVPYDLEDEING 653


>SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +1

Query: 40  NGSRYMSPPLPFELPNFISDIHNSRKFLDQFF-SLFN 147
           NG+ YM  P   + P  ISD+   R  + + + SL N
Sbjct: 362 NGNIYMWSPKALKSPTKISDLETRRNIIQEVYDSLIN 398


>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 809

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -1

Query: 169 LPSKFRID*IRRKIDPGIS*NYECQR*N*AAQMGVV 62
           LPSKF +D   +   PG+S  +E  R   A  +GV+
Sbjct: 437 LPSKFTVDTCAKACVPGVSDTFEPVRSAAAEALGVL 472


>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 61  PPLPFELPNFISDIHNSRK 117
           PP+P   PNF++D+ N  K
Sbjct: 80  PPIPKGAPNFLADVLNLLK 98


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,027,979
Number of Sequences: 5004
Number of extensions: 38468
Number of successful extensions: 74
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)