Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5422
         (508 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    24   1.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.4  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   5.6  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   7.3  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    21   7.3  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    21   7.3  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   7.3  
DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.              21   9.7  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +1

Query: 34  VCNGSRYMSPPLPFELPNFISDIHNSRKFLD 126
           VC+   Y S  +  + P   +D+ N RK+ D
Sbjct: 576 VCDNQTYTSLQMAMKNPIEFTDLSNERKYED 606


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 434 W*YNNVSRTDPRGGARYPIR 493
           W  NN  R DP+  +RY IR
Sbjct: 810 WNMNN-KRLDPKSDSRYTIR 828


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 13/55 (23%), Positives = 23/55 (41%)
 Frame = +1

Query: 187 PCICSTTKFVIIC*QRRNKYYRITCSLKLNIVLFPFILSLRDSMRQFNRNKYINF 351
           P   +  KF+I+C   R    +    L+ N+ + P  L   D  +   +N +  F
Sbjct: 443 PVHATLEKFMILCNLMRTMNRKQISELESNMQISPNELKPNDKSQVIKQNTWTVF 497


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -2

Query: 489 IGYRAPPRGSVLDTLLYYHVYLNFKV 412
           IGY    R   L T +Y  + L+FK+
Sbjct: 212 IGYETNDRKEKLATGIYQRLSLSFKL 237


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 325 FNRNKYINFHYLPKYCFE*INIK 393
           +N N Y N +Y  K  +  INI+
Sbjct: 98  YNNNNYNNNNYNKKLYYNIINIE 120


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 325 FNRNKYINFHYLPKYCFE*INIK 393
           +N N Y N +Y  K  +  INI+
Sbjct: 98  YNNNNYNNNNYNKKLYYNIINIE 120


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +3

Query: 159 FDGRHADN*SMYLLNNQVC 215
           FD  HA N    L + QVC
Sbjct: 27  FDSLHAGNAEKTLCSGQVC 45


>DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.
          Length = 135

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = -3

Query: 314 ESLSDKINGNKTMFNFNEQVI 252
           E L  K NG     NFNE VI
Sbjct: 64  ECLIKKFNGYDDGGNFNEVVI 84


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,387
Number of Sequences: 438
Number of extensions: 3041
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13986774
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)