Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5421
         (649 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    26   4.1  
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha...    25   7.1  
SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces pom...    25   7.1  
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    25   9.4  
SPBC36B7.02 |||Svf1 family protein Svf2|Schizosaccharomyces pomb...    25   9.4  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   9.4  

>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +2

Query: 77  VLTTSSFIVRFQRFFPSYYSTPK*PSLNTSRALRHIFPLVELK 205
           VLT+  F ++  + FP+  + P   +LN  R L  I P +  K
Sbjct: 69  VLTSRLFALKNDKKFPNPETAPASEALNCIRLLTRIIPFLNEK 111


>SPBC609.03 |||WD repeat protein, human IQWD1
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = -1

Query: 265 PLRTGVPGLHGHSQT*VLKTFKLYKRKDMS*CSRSIEGRLF 143
           P+ T V   +GH     +K    Y + D    S S +GR F
Sbjct: 656 PVNTHVKSYYGHCNVESIKNVNFYGQNDEYVMSGSDDGRFF 696


>SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 577

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +1

Query: 214 KLKFGYARGGPGHQCAEDP 270
           K K GY   GPG++C   P
Sbjct: 85  KSKVGYLSPGPGYECDSSP 103


>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 843

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +1

Query: 79  PYHQFIHSTLSKIFPLILFNTKITFPQYFE 168
           P +Q ++   + I P++L  T I FP  +E
Sbjct: 349 PIYQVLNIIFAVICPIVLLLTLIRFPSLYE 378


>SPBC36B7.02 |||Svf1 family protein Svf2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 353

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 42  GWWYLPARTHKRSLPPVHS 98
           GW Y PA+T K   P V+S
Sbjct: 65  GWTYYPAKTEKNVEPIVNS 83


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 95   FIVRFQRFFPSYYSTP 142
            F +R QR FP+Y+S P
Sbjct: 1489 FSLRLQRTFPNYFSEP 1504


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,937,120
Number of Sequences: 5004
Number of extensions: 64035
Number of successful extensions: 131
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)