Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5421
(649 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0282 - 2088302-2089081 31 1.0
11_01_0273 - 2048527-2049297 31 1.0
10_01_0332 - 3635909-3635912,3635947-3636003,3636004-3636053,363... 31 1.0
03_01_0615 + 4523202-4524518 30 1.4
10_08_0158 - 15298902-15299111,15300557-15300655,15301375-153014... 29 2.4
02_01_0665 + 4944756-4945151,4946758-4947259,4947909-4947979,494... 29 4.2
09_03_0001 - 11373469-11373862,11374072-11374264,11374414-113744... 28 7.4
02_04_0219 + 21007875-21008253,21009774-21009811,21009948-210099... 28 7.4
05_05_0270 - 23728986-23729267,23729575-23730120,23730207-237305... 27 9.7
>12_01_0282 - 2088302-2089081
Length = 259
Score = 30.7 bits (66), Expect = 1.0
Identities = 19/56 (33%), Positives = 32/56 (57%)
Frame = +3
Query: 216 T*VWLCPWRPGTPVRRGSKLVVLYNLSNPNRESVLSSVVVTARRRSGQQYTGPGNR 383
T V LCP+ P TP+ + +V+L++ + R + LS++ + AR S + PG R
Sbjct: 33 TTVCLCPYLPATPLPTSTTVVILHH-PHALRRNPLSTLPLLARSLSNLRLI-PGRR 86
>11_01_0273 - 2048527-2049297
Length = 256
Score = 30.7 bits (66), Expect = 1.0
Identities = 19/54 (35%), Positives = 31/54 (57%)
Frame = +3
Query: 222 VWLCPWRPGTPVRRGSKLVVLYNLSNPNRESVLSSVVVTARRRSGQQYTGPGNR 383
V LCP+ P TP+ + +VVL++ + R + LS++ + AR S + PG R
Sbjct: 35 VCLCPYLPATPLPTSTTVVVLHH-PHALRRNPLSTLPLLARSLSNLRLI-PGRR 86
>10_01_0332 -
3635909-3635912,3635947-3636003,3636004-3636053,
3637887-3637945,3638054-3638114,3638938-3640479
Length = 590
Score = 30.7 bits (66), Expect = 1.0
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = -1
Query: 451 YTGWTTPTRIRLMSRNKKCQSTYLFPGPVYCCPERLRAVTTTLDSTLSRFG-FDKLYSTT 275
+ G + ++ R+ TYL PG + P RL ++ FG DKL++ T
Sbjct: 144 FNGEAVAFQTKITRRSGLGDRTYLPPG-IQARPPRLSMAEARAEAEAVMFGCLDKLFAAT 202
Query: 274 NLDPLR 257
+DP R
Sbjct: 203 GVDPSR 208
>03_01_0615 + 4523202-4524518
Length = 438
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +3
Query: 486 ADVSATRVWPPVFIPQSCPAPLGLGGTEAKP 578
A + + W P+F Q+CPAP G GG A P
Sbjct: 128 ASLPCSSSWCPLFQGQACPAPQG-GGDAAPP 157
>10_08_0158 -
15298902-15299111,15300557-15300655,15301375-15301443,
15301535-15301681,15301762-15301839,15302221-15302264,
15302521-15302603,15303394-15303620
Length = 318
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -3
Query: 563 PA*PQRGRTGLGNKHRGPDSGGANVRQF 480
PA ++ + G G + GPD GG +RQF
Sbjct: 73 PATSKKKKRGPGTRATGPDKGGRGLRQF 100
>02_01_0665 +
4944756-4945151,4946758-4947259,4947909-4947979,
4948039-4948239
Length = 389
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = -2
Query: 597 GNNQQIGV*LRSRLTPKGQDRTG 529
GNN QIG LRS P G+D G
Sbjct: 48 GNNNQIGTPLRSDFPPYGRDMPG 70
>09_03_0001 -
11373469-11373862,11374072-11374264,11374414-11374482,
11374858-11374984,11375223-11375485,11375697-11375785,
11375832-11375909,11376070-11376141,11376234-11376372,
11378857-11379323,11380781-11381345,11382553-11382622
Length = 841
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/61 (24%), Positives = 29/61 (47%)
Frame = +1
Query: 76 GPYHQFIHSTLSKIFPLILFNTKITFPQYFESTTTYLSSCRA*KSLKLKFGYARGGPGHQ 255
G Y+ + +T + P +L +I F ++ TTT+ ++KL++G + G
Sbjct: 329 GEYNITLAATANSALPPMLNAFEIYFLITYDGTTTFSKDFDTIMAIKLEYGVKKNWMGDP 388
Query: 256 C 258
C
Sbjct: 389 C 389
>02_04_0219 +
21007875-21008253,21009774-21009811,21009948-21009976,
21010398-21010443,21010567-21010681,21010790-21010857,
21011780-21011974,21012180-21012281,21012889-21013119,
21013514-21013684
Length = 457
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +2
Query: 233 PVEARDTSAQRIQIGCAVQFVEPKS*ECAI*CSCYGAETFRTTVH 367
PV+ + R+Q+G V K EC + SC E F +VH
Sbjct: 378 PVDMKTIEGLRVQVGHTVMLNVKKIAECRLLLSCMN-ELFELSVH 421
>05_05_0270 -
23728986-23729267,23729575-23730120,23730207-23730561,
23731147-23731442,23731665-23731714,23731802-23731904,
23732059-23732148,23732328-23732384,23732571-23732618,
23732725-23732753,23732940-23733087
Length = 667
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -3
Query: 371 SCVLLSGTSPRRNNYTR*HTLTIWVRQIVQHNQFGSSAHW 252
SC+ +SG S N R H +T +++Q Q G A W
Sbjct: 544 SCIWMSGVSVIDLNKWREHDVTAVRNRVLQKLQHGPEASW 583
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,075,443
Number of Sequences: 37544
Number of extensions: 498061
Number of successful extensions: 1179
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1179
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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