Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5421
         (649 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006662-3|AAF39895.1|  368|Caenorhabditis elegans Hypothetical ...    29   2.1  
Z81564-8|CAB04571.1|  140|Caenorhabditis elegans Hypothetical pr...    29   2.8  

>AC006662-3|AAF39895.1|  368|Caenorhabditis elegans Hypothetical
           protein H23L24.4 protein.
          Length = 368

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
 Frame = -1

Query: 463 W*RSYTGWTTPTRIRLMSRNKKCQSTYLFPGPVYCCPERLRAVTTTLDSTLSRF-GFDKL 287
           W R+Y+ +  P  I L  R+  C  TY+F   +      +  V + + ++ +RF   D L
Sbjct: 36  WDRTYSKYLLPNSIFLYKRSSTCTRTYIF--VILRLSSIILLVFSIISASSARFLTVDTL 93

Query: 286 YSTTNLDPLRTGVPGLHGH 230
           +S + LD L    P  + H
Sbjct: 94  FS-SRLDNLHIYPPVSYHH 111


>Z81564-8|CAB04571.1|  140|Caenorhabditis elegans Hypothetical
           protein K05C4.8 protein.
          Length = 140

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/33 (39%), Positives = 23/33 (69%)
 Frame = +1

Query: 511 GPLCLFPSPVLPLWG*AGPKLNPDLLIITPARE 609
           GP C F SP+LP+      KL+P++LI++ +++
Sbjct: 46  GPTCAFNSPMLPV-----KKLSPNVLILSSSKD 73


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,818,924
Number of Sequences: 27780
Number of extensions: 387304
Number of successful extensions: 734
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)