Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5421
         (649 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein ...    23   2.5  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   5.9  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   5.9  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   7.8  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   7.8  

>AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein
           protein.
          Length = 87

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -3

Query: 644 FPAPGLVPGHYRSLAGVIISKSGFSFGP 561
           FP PG  P +  S +GVI+  SG+ F P
Sbjct: 51  FP-PGPPPNNEDS-SGVIVGASGYGFVP 76


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = +1

Query: 55  YPRGLTRGPYHQFIHSTLSKIFPLILFNTKITFPQYF 165
           +PR  T    H F   T  +I   I   ++I FP  F
Sbjct: 420 FPRRATLAQLHNFTTMTPQEIAQWIDRRSRIVFPVAF 456


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -3

Query: 548 RGRTGLGNKHRGPD 507
           RGRTG  NK++  D
Sbjct: 98  RGRTGFNNKNKDGD 111


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +1

Query: 493 LAPPESGPLCLFPSP 537
           L PP S P+   PSP
Sbjct: 435 LTPPSSNPVSPVPSP 449


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +1

Query: 211 LKLKFGYARGGPGHQCAEDPNWLCCTICRT 300
           L ++ GY R  PGH     P++   T+  T
Sbjct: 204 LGVQNGYGRHLPGHAQMGRPSYTTATMATT 233


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,862
Number of Sequences: 438
Number of extensions: 5474
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)