Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5420
         (374 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   2.2  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    24   6.8  
SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr 1|...    24   6.8  
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos...    24   9.0  

>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 262

 Score = 25.8 bits (54), Expect = 2.2
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +2

Query: 149 PSVPERGRAFPSVAERGRARPSVVLTTQVDYP 244
           P++P RG   PS+  R  +RPSV+   QV  P
Sbjct: 112 PALPSRGT--PSLPSRPGSRPSVLNQEQVPPP 141


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 24.2 bits (50), Expect = 6.8
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 189  PSAAERGRALFSLHKWI 239
            P+A E  +  FSLH WI
Sbjct: 1195 PAAQESAKLAFSLHGWI 1211


>SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 809

 Score = 24.2 bits (50), Expect = 6.8
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -1

Query: 323 IHSSNYETVFTSFKL*SFKINLAVHC 246
           + SS   ++F  F L SF+   A+HC
Sbjct: 643 LESSRLSSLFKEFDLVSFRTVPAIHC 668


>SPCC1322.12c |bub1||serine/threonine protein kinase
           Bub1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1044

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
 Frame = -2

Query: 259 WQYIARVIHLCSENNARPRSAALGHARE--RSATLGNARP 146
           W+  + V H      ARP    L +A E  R+  L NA P
Sbjct: 148 WKEASEVFHAAVSREARPLVRLLRNAAEFSRAYDLHNAHP 187


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,479,954
Number of Sequences: 5004
Number of extensions: 27148
Number of successful extensions: 79
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 120195862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)