Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5420
(374 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_01_0172 - 1928648-1930751,1932019-1932243,1933709-1934676 29 0.90
07_01_1087 - 9959933-9960212,9960292-9960462,9960545-9961365,996... 29 0.90
02_02_0579 + 11755361-11755545,11755695-11755763,11755904-11756420 29 0.90
04_01_0516 + 6772617-6773042 29 1.2
11_06_0388 + 23048576-23051546,23051830-23052371,23052444-230525... 28 2.1
03_05_0448 - 24426509-24426737,24427306-24427401,24427723-244278... 28 2.7
06_03_1328 + 29361248-29361502,29361903-29362453,29362585-293626... 27 3.6
01_06_1210 + 35430143-35430796,35430912-35431004,35431397-354315... 27 3.6
10_07_0106 - 12933918-12934041,12934164-12934486,12934584-129349... 27 4.8
07_03_0826 - 21774445-21774852,21776047-21776083,21776750-217768... 27 4.8
04_04_0319 + 24355275-24355401,24355504-24355603,24356271-243566... 27 4.8
08_01_0585 + 5187545-5187961 27 6.3
11_01_0519 + 4066776-4066892,4067042-4067099,4067322-4067608,406... 26 8.4
04_04_0662 - 27051508-27051828,27051878-27053438,27054333-27054733 26 8.4
04_04_0451 - 25323178-25323241,25323614-25323741,25324533-253246... 26 8.4
03_01_0238 + 1854070-1854344,1854621-1854712,1854852-1855045,185... 26 8.4
02_05_0089 - 25715637-25716333,25716481-25717238 26 8.4
02_01_0278 - 1851338-1851412,1851579-1851819,1851946-1852047,185... 26 8.4
>10_01_0172 - 1928648-1930751,1932019-1932243,1933709-1934676
Length = 1098
Score = 29.5 bits (63), Expect = 0.90
Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +3
Query: 72 TNQKYLSRYKKLEHKSRRAPSAPERG-RAFPSVAERSR 182
T+ K S+ KKL K RR P+AP G A PS+ R R
Sbjct: 307 TDNKLESQIKKLLDKKRRQPTAPSWGPPATPSLHLRQR 344
>07_01_1087 -
9959933-9960212,9960292-9960462,9960545-9961365,
9961985-9962455
Length = 580
Score = 29.5 bits (63), Expect = 0.90
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +2
Query: 113 QIAPSAERSRAWPSVPERGRAFPSVAERG 199
++AP +R +A S+P+RG+A P+ E G
Sbjct: 323 ELAPEPKRDKAATSMPKRGKAAPAQFELG 351
>02_02_0579 + 11755361-11755545,11755695-11755763,11755904-11756420
Length = 256
Score = 29.5 bits (63), Expect = 0.90
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = +1
Query: 133 ALPSVAERSRAWPSVPERGRARPSAAERCSH 225
ALP+ SR+ P V GRA P+AAER H
Sbjct: 140 ALPATDAASRS-PHVGHVGRAAPAAAERLQH 169
>04_01_0516 + 6772617-6773042
Length = 141
Score = 29.1 bits (62), Expect = 1.2
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = +3
Query: 123 RAPSAPERGRAFPSVAERSRAWPSAAERGRALFSLHKW 236
R SA +GR + RSR WPS A + H W
Sbjct: 76 RRSSAAAKGRTRTATTWRSRRWPSRATTTTETAAAHGW 113
>11_06_0388 +
23048576-23051546,23051830-23052371,23052444-23052517,
23053006-23053090,23053281-23053367,23053585-23053657,
23053882-23053925,23054041-23054169,23054301-23054402,
23054529-23054585
Length = 1387
Score = 28.3 bits (60), Expect = 2.1
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -1
Query: 314 SNYETVFTSFKL*SFKINLAVHCSGNPL 231
S+YETV TS+ + ++ H GNPL
Sbjct: 575 SSYETVETSYNVPDILVDKVCHAVGNPL 602
>03_05_0448 -
24426509-24426737,24427306-24427401,24427723-24427847,
24428694-24428846,24429921-24430247,24431415-24431630,
24431768-24432112,24433897-24434253
Length = 615
Score = 27.9 bits (59), Expect = 2.7
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +3
Query: 114 KSRRAPSAPERGRAFPSVAERSRAWPSAAERGRA 215
K R +A E+GRA + E+ RA +A E+GRA
Sbjct: 142 KGRAKVAAFEKGRAKVAAFEKGRAKMAAFEKGRA 175
Score = 27.1 bits (57), Expect = 4.8
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +3
Query: 114 KSRRAPSAPERGRAFPSVAERSRAWPSAAERGRA 215
K R +A E+GRA + E+ RA +A E+GRA
Sbjct: 132 KVRAKVAAFEKGRAKVAAFEKGRAKVAAFEKGRA 165
Score = 26.2 bits (55), Expect = 8.4
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +3
Query: 114 KSRRAPSAPERGRAFPSVAERSRAWPSAAERGR 212
K R +A E+GRA + E+ RA +A E+GR
Sbjct: 152 KGRAKVAAFEKGRAKMAAFEKGRAKMAAFEKGR 184
>06_03_1328 +
29361248-29361502,29361903-29362453,29362585-29362671,
29362910-29362966,29363069-29363307,29364190-29364308,
29364397-29364483,29365511-29365567
Length = 483
Score = 27.5 bits (58), Expect = 3.6
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +1
Query: 202 SAAERCSHYTSGLPEQCTARFILKL 276
S C++YT G+P T F+LK+
Sbjct: 409 SVINLCAYYTIGIPSAVTFAFVLKI 433
>01_06_1210 +
35430143-35430796,35430912-35431004,35431397-35431546,
35431817-35432076,35433378-35433641,35434475-35434682
Length = 542
Score = 27.5 bits (58), Expect = 3.6
Identities = 19/69 (27%), Positives = 35/69 (50%)
Frame = +3
Query: 63 NIKTNQKYLSRYKKLEHKSRRAPSAPERGRAFPSVAERSRAWPSAAERGRALFSLHKWIT 242
N+K K L + +EH+ R P+AP R R + R+ P R R + +++T
Sbjct: 170 NVKA-VKALKSLRHMEHRERHCPTAP-RPRCLVPLPTGYRS-PLPWPRSRDM----EYLT 222
Query: 243 RAMYCQIYF 269
+++ C ++F
Sbjct: 223 KSLLCAVWF 231
>10_07_0106 -
12933918-12934041,12934164-12934486,12934584-12934937,
12935029-12935646
Length = 472
Score = 27.1 bits (57), Expect = 4.8
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +3
Query: 81 KYLSRYKKLEHKSRRAPSAPERGRA 155
K L + ++ H+SRR+P+ PER A
Sbjct: 10 KVLVQRRRRVHRSRRSPTKPERAAA 34
>07_03_0826 -
21774445-21774852,21776047-21776083,21776750-21776839,
21777251-21777399
Length = 227
Score = 27.1 bits (57), Expect = 4.8
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -3
Query: 258 GSTLLG*STCV-VRTTLGRARPRSATLGNARPRSGTLGHARERSAL 124
G+ L G ++C R LG ARP +A R+ +G RE+ A+
Sbjct: 157 GARLGGVASCAGQRGELGEARPDAAPSAGQEARARRVGGGREKDAV 202
>04_04_0319 +
24355275-24355401,24355504-24355603,24356271-24356618,
24356705-24356745,24356821-24356867,24358043-24358107,
24358186-24358308,24358397-24358534,24358658-24358899,
24358988-24359118,24359363-24359388,24359746-24359882,
24359964-24360376,24360514-24360550,24360643-24360667,
24360755-24360887,24361241-24361340,24362015-24362115,
24362998-24363084
Length = 806
Score = 27.1 bits (57), Expect = 4.8
Identities = 15/40 (37%), Positives = 17/40 (42%)
Frame = -2
Query: 262 IWQYIARVIHLCSENNARPRSAALGHARERSATLGNARPR 143
IW Y +V +LC E N S H E S G A R
Sbjct: 75 IWIYSKKVEYLCHECNELLGSYGSAHCNELSIPTGGATNR 114
>08_01_0585 + 5187545-5187961
Length = 138
Score = 26.6 bits (56), Expect = 6.3
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +1
Query: 148 AERSRAWPSVPERGRARPSAAER 216
A+R R ++ ER R RP+AAER
Sbjct: 83 AKRRRPHAAIEERRRPRPAAAER 105
>11_01_0519 +
4066776-4066892,4067042-4067099,4067322-4067608,
4067706-4067822,4067898-4067958,4068042-4068133,
4068547-4068632,4068926-4068975,4069077-4069117,
4069222-4069392,4069875-4069942,4070088-4070148,
4070471-4070757,4072008-4072172,4072759-4072760,
4072829-4073139,4073600-4073787,4075231-4075482,
4076035-4076114,4076199-4076399,4076959-4077014,
4077137-4077328
Length = 980
Score = 26.2 bits (55), Expect = 8.4
Identities = 8/23 (34%), Positives = 17/23 (73%)
Frame = -1
Query: 128 RSARFVLKLFIP*QIFLIRFYVC 60
++AR++ ++ +P +F RFY+C
Sbjct: 93 QTARWISEICVPSSLFTSRFYIC 115
>04_04_0662 - 27051508-27051828,27051878-27053438,27054333-27054733
Length = 760
Score = 26.2 bits (55), Expect = 8.4
Identities = 11/50 (22%), Positives = 24/50 (48%)
Frame = +1
Query: 79 KNICHGIKSLSTNRAERRALPSVAERSRAWPSVPERGRARPSAAERCSHY 228
+ I G++ L NR+ +R ++ + V E + RP ++ C ++
Sbjct: 522 EEISSGMRRLGYNRSSKRCKEKWENINKYFKKVKESNKKRPEDSKTCPYF 571
>04_04_0451 - 25323178-25323241,25323614-25323741,25324533-25324634,
25325314-25325382,25325489-25325557,25325646-25325720,
25325805-25325909,25326394-25326492,25326626-25328344,
25328629-25328931,25329031-25329129,25329733-25329850,
25329933-25330018,25330091-25330159,25330232-25330306,
25330675-25330772,25331271-25331432,25332391-25332556,
25332902-25332970,25333064-25333126,25333221-25333376,
25334027-25334365
Length = 1410
Score = 26.2 bits (55), Expect = 8.4
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +1
Query: 106 LSTNRAERRALPSVAERSRAWPSVPER 186
L+ +R + S+ E +R+WP+ PE+
Sbjct: 1080 LTRSRESKNNTSSLVETARSWPNYPEK 1106
>03_01_0238 +
1854070-1854344,1854621-1854712,1854852-1855045,
1855529-1855568,1855734-1855815,1856972-1857049,
1857144-1857269,1857544-1857665,1858018-1858057,
1858250-1858324,1858414-1858585
Length = 431
Score = 26.2 bits (55), Expect = 8.4
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 6/52 (11%)
Frame = +2
Query: 110 AQIAPSAERSRAWPSVPERGRAF------PSVAERGRARPSVVLTTQVDYPS 247
AQ P S+A + PER + P+ A RGR R S+ + +PS
Sbjct: 39 AQQEPRRRLSKAAAAAPERTEEWRIDGNKPAAAARGRRRASLTAMPSLPFPS 90
>02_05_0089 - 25715637-25716333,25716481-25717238
Length = 484
Score = 26.2 bits (55), Expect = 8.4
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = +1
Query: 70 KRIKNICHGIKSLSTNRAERRALPSVAERSRAWPSVPERGRARPSAAERCSH 225
++ K++ G+ +T +A+ +AL + R P+VP RG SAA H
Sbjct: 32 QQAKSVRVGVAD-TTTQAQAQALHRLVSRGSPRPAVPCRGEPSISAAPSKHH 82
>02_01_0278 -
1851338-1851412,1851579-1851819,1851946-1852047,
1852291-1852364,1852455-1852592,1852848-1853003,
1853364-1853513,1853808-1853867,1853946-1854073,
1854209-1854617,1855571-1855628,1856435-1856493,
1857478-1857606,1857765-1857774,1858134-1858183,
1858633-1858854
Length = 686
Score = 26.2 bits (55), Expect = 8.4
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = +1
Query: 79 KNICHGIKSLS--TNRAERRALPSVAERSRAWPSVPERGRARPSA 207
+ +C + S + ++ ERRA+ S+A + P E+G+ R SA
Sbjct: 583 ERVCSSVDSNNQDSDNEERRAISSIARTMISPPRSQEKGKNRASA 627
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,237,901
Number of Sequences: 37544
Number of extensions: 178150
Number of successful extensions: 770
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 600754600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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