Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5420
         (374 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY373570-1|AAR20251.1| 2726|Drosophila melanogaster 309 kDa cent...    28   3.4  
AE014296-2465|AAZ83989.1| 2897|Drosophila melanogaster CG33957-P...    28   3.4  
AY118441-1|AAM48470.1|  961|Drosophila melanogaster SD06668p pro...    27   5.9  
AE014297-3591|AAS65210.1|  715|Drosophila melanogaster CG6695-PB...    27   5.9  
AE014297-3590|AAF56321.3|  961|Drosophila melanogaster CG6695-PA...    27   5.9  
AY047513-1|AAK77245.1|  724|Drosophila melanogaster GH01880p pro...    27   7.9  
AE014296-1223|AAF50583.2|  724|Drosophila melanogaster CG8605-PA...    27   7.9  

>AY373570-1|AAR20251.1| 2726|Drosophila melanogaster 309 kDa
            centrosomal protein protein.
          Length = 2726

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
 Frame = +3

Query: 63   NIKTN--QKYLSRYKKLEHKSRRAPSAPERGRAFPSVAERSRAWPSAA-ERGRALFSLH 230
            ++KT+  + Y SR + LE K +++    E+G     VAE+ R   +   ++ +AL SLH
Sbjct: 1500 SLKTDIGEGYQSRIRVLEEKLKQSRPTAEQGVVLSQVAEKLRDIETTLDQKTKALESLH 1558


>AE014296-2465|AAZ83989.1| 2897|Drosophila melanogaster CG33957-PB,
            isoform B protein.
          Length = 2897

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
 Frame = +3

Query: 63   NIKTN--QKYLSRYKKLEHKSRRAPSAPERGRAFPSVAERSRAWPSAA-ERGRALFSLH 230
            ++KT+  + Y SR + LE K +++    E+G     VAE+ R   +   ++ +AL SLH
Sbjct: 1671 SLKTDIGEGYQSRIRVLEEKLKQSGPTAEQGVVLSQVAEKLRDIETTLDQKTKALESLH 1729


>AY118441-1|AAM48470.1|  961|Drosophila melanogaster SD06668p
           protein.
          Length = 961

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 16/42 (38%), Positives = 25/42 (59%)
 Frame = -2

Query: 244 RVIHLCSENNARPRSAALGHARERSATLGNARPRSGALGARR 119
           +V++  S+ N R RS +   +R RSAT+  +R  S   G+RR
Sbjct: 405 KVMNESSKRNRR-RSRSHSRSRSRSATVSRSRSGSRRSGSRR 445


>AE014297-3591|AAS65210.1|  715|Drosophila melanogaster CG6695-PB,
           isoform B protein.
          Length = 715

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 16/42 (38%), Positives = 25/42 (59%)
 Frame = -2

Query: 244 RVIHLCSENNARPRSAALGHARERSATLGNARPRSGALGARR 119
           +V++  S+ N R RS +   +R RSAT+  +R  S   G+RR
Sbjct: 405 KVMNESSKRNRR-RSRSHSRSRSRSATVSRSRSGSRRSGSRR 445


>AE014297-3590|AAF56321.3|  961|Drosophila melanogaster CG6695-PA,
           isoform A protein.
          Length = 961

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 16/42 (38%), Positives = 25/42 (59%)
 Frame = -2

Query: 244 RVIHLCSENNARPRSAALGHARERSATLGNARPRSGALGARR 119
           +V++  S+ N R RS +   +R RSAT+  +R  S   G+RR
Sbjct: 405 KVMNESSKRNRR-RSRSHSRSRSRSATVSRSRSGSRRSGSRR 445


>AY047513-1|AAK77245.1|  724|Drosophila melanogaster GH01880p
           protein.
          Length = 724

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +1

Query: 97  IKSLSTNRAERRALPSVAERSRAWPSVPERGRARP 201
           +++L+T         S++ R  AWP++PE+    P
Sbjct: 541 MRNLATKATNEMKAKSMSYRRDAWPTMPEQNSREP 575


>AE014296-1223|AAF50583.2|  724|Drosophila melanogaster CG8605-PA
           protein.
          Length = 724

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +1

Query: 97  IKSLSTNRAERRALPSVAERSRAWPSVPERGRARP 201
           +++L+T         S++ R  AWP++PE+    P
Sbjct: 541 MRNLATKATNEMKAKSMSYRRDAWPTMPEQNSREP 575


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,390,781
Number of Sequences: 53049
Number of extensions: 285752
Number of successful extensions: 879
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 24,988,368
effective HSP length: 77
effective length of database: 20,903,595
effective search space used: 982468965
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)