Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5420
         (374 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          25   0.29 
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      25   0.29 
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   1.6  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   1.6  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   4.8  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   4.8  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    20   8.3  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    20   8.3  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 25.0 bits (52), Expect = 0.29
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -2

Query: 364 KNKINSLHPYLFYLYTAVTTR 302
           KN IN    Y++ LYTAV TR
Sbjct: 132 KNNINEAQ-YIYSLYTAVITR 151


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 25.0 bits (52), Expect = 0.29
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -2

Query: 364 KNKINSLHPYLFYLYTAVTTR 302
           KN IN    Y++ LYTAV TR
Sbjct: 132 KNNINEAQ-YIYSLYTAVITR 151


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 369 RTKIKSTRFIHIYSIY 322
           RTK++ T F H Y IY
Sbjct: 32  RTKLQPTYFHHTYIIY 47


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 369 RTKIKSTRFIHIYSIY 322
           RTK++ T F H Y IY
Sbjct: 32  RTKLQPTYFHHTYIIY 47


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.0 bits (42), Expect = 4.8
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
 Frame = +3

Query: 54  IFTNIKTNQKYLSRYKKLEHKSRRA-----PSAPERGRAFPSVAERSR 182
           +F   +T + Y  R   LEHK RRA     P    +G A   + +R++
Sbjct: 137 LFIREQTEEMY--REMLLEHKKRRARRDIHPELNTQGIALADLTQRAQ 182


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 4.8
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = +1

Query: 148 AERSRAWPSVPERGRARPSAAERCSHYTSGLPEQ 249
           A RS  W +        PSAA +  H   G P+Q
Sbjct: 82  AARSDDWLANANSPVGSPSAALQPQHVVYGNPQQ 115


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 20.2 bits (40), Expect = 8.3
 Identities = 5/11 (45%), Positives = 8/11 (72%)
 Frame = +3

Query: 234 WITRAMYCQIY 266
           W+   ++CQIY
Sbjct: 118 WVLGPLFCQIY 128


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 20.2 bits (40), Expect = 8.3
 Identities = 5/11 (45%), Positives = 8/11 (72%)
 Frame = +3

Query: 234 WITRAMYCQIY 266
           W+   ++CQIY
Sbjct: 84  WVLGPLFCQIY 94


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,591
Number of Sequences: 438
Number of extensions: 1984
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9052365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)