Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5415
         (573 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084159-2|AAK39359.1|  659|Caenorhabditis elegans Hypothetical ...    29   2.3  
Z74042-16|CAA98527.3|  512|Caenorhabditis elegans Hypothetical p...    28   4.1  
Z74042-15|CAD54157.1|  505|Caenorhabditis elegans Hypothetical p...    28   4.1  

>AC084159-2|AAK39359.1|  659|Caenorhabditis elegans Hypothetical
           protein Y73B3A.1 protein.
          Length = 659

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 13/21 (61%), Positives = 13/21 (61%)
 Frame = -2

Query: 569 NRQGGGCPTRGGLPRGSPANN 507
           N  G G P RG LPR SPA N
Sbjct: 330 NDFGNGLPMRGQLPRNSPAAN 350


>Z74042-16|CAA98527.3|  512|Caenorhabditis elegans Hypothetical
           protein T11F9.2b protein.
          Length = 512

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +1

Query: 259 FIPFAYVIHL*PLEDLYNEYLLCIFQRELLYSYLGT 366
           F+ F+  + L  ++D Y+EY+  I     +Y +LGT
Sbjct: 428 FLGFSIGVMLDSVDDSYDEYIFAISSGMYMYIFLGT 463


>Z74042-15|CAD54157.1|  505|Caenorhabditis elegans Hypothetical
           protein T11F9.2a protein.
          Length = 505

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +1

Query: 259 FIPFAYVIHL*PLEDLYNEYLLCIFQRELLYSYLGT 366
           F+ F+  + L  ++D Y+EY+  I     +Y +LGT
Sbjct: 421 FLGFSIGVMLDSVDDSYDEYIFAISSGMYMYIFLGT 456


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,446,524
Number of Sequences: 27780
Number of extensions: 213048
Number of successful extensions: 445
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 445
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)