Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5415
         (573 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    29   0.043
DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              22   3.8  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   8.7  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   8.7  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   8.7  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   8.7  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   8.7  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 28.7 bits (61), Expect = 0.043
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 117 LNC*CKVINICTFSVKHFCTVT 52
           L+C   ++N+C  SV  FC +T
Sbjct: 123 LSCTASILNLCMISVDRFCAIT 144


>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 55  NCTKMLYRECTNIDNFTLTIKINYVRHCY 141
           N T  L  EC+ I +  + IKI+ +  C+
Sbjct: 95  NETDQLIVECSPISDANVHIKISKIFQCF 123


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +3

Query: 258 IHSFCICNSFIA 293
           IH  CIC  FIA
Sbjct: 484 IHKSCICVRFIA 495


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +3

Query: 258 IHSFCICNSFIA 293
           IH  CIC  FIA
Sbjct: 484 IHKSCICVRFIA 495


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +1

Query: 430 KDKTSGAFASSCAPGVRIPTNL 495
           +++ +  F+ SCAPG  + + L
Sbjct: 523 ENEAADFFSGSCAPGAPLDSKL 544


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +1

Query: 430 KDKTSGAFASSCAPGVRIPTNL 495
           +++ +  F+ SCAPG  + + L
Sbjct: 523 ENEAADFFSGSCAPGAPLDSKL 544


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +1

Query: 430 KDKTSGAFASSCAPGVRIPTNL 495
           +++ +  F+ SCAPG  + + L
Sbjct: 523 ENEAADFFSGSCAPGAPLDSKL 544


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,551
Number of Sequences: 438
Number of extensions: 2627
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16504155
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)