Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5413
         (604 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006761-2|AAF60547.1|  402|Caenorhabditis elegans Hypothetical ...    28   5.9  
L25599-5|ABN43086.1|  337|Caenorhabditis elegans Hypothetical pr...    27   7.8  

>AC006761-2|AAF60547.1|  402|Caenorhabditis elegans Hypothetical
           protein Y41G9A.5 protein.
          Length = 402

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = -1

Query: 355 RTESDTEQSSLKYVITIPSTKS 290
           RTE + E++S++ V TIPST S
Sbjct: 195 RTEEEKEEASIENVSTIPSTTS 216


>L25599-5|ABN43086.1|  337|Caenorhabditis elegans Hypothetical
           protein F54H12.5 protein.
          Length = 337

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 10/39 (25%), Positives = 23/39 (58%)
 Frame = +3

Query: 288 IDFVDGIVITYFNEDCSVSLSVRIISLDVLNFVFAIVQI 404
           IDF+D + ++  ++ C + +    + +D L+F F  +Q+
Sbjct: 40  IDFIDLLELSLASKKCEIYMKTCCLKIDSLHFHFRRIQL 78


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,881,107
Number of Sequences: 27780
Number of extensions: 184786
Number of successful extensions: 432
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 431
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)