Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5411
         (734 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E...    25   1.1  
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ...    28   1.6  
SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein P...    26   6.4  
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co...    26   6.4  
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    25   8.5  

>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
           EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 439

 Score = 24.6 bits (51), Expect(2) = 1.1
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 114 NKIKTPLLLFNGIRRNILRIS 176
           N  K   LLF G R+N LR++
Sbjct: 2   NSAKATSLLFQGFRKNCLRLN 22



 Score = 22.2 bits (45), Expect(2) = 1.1
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 240 RNNCLMLNRLLFNTAI 287
           R NCL LNR+ F + +
Sbjct: 15  RKNCLRLNRISFASGL 30


>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 782

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +1

Query: 271 YLTLRYIFKIFKHLLSSFIILNMCYG-EYHTKRNILYRFDHSSR 399
           Y  L+YI +IF+HL   F+  N  Y      K  +  RF  SS+
Sbjct: 584 YNDLQYICRIFEHLKGGFMFSNKDYDFLIQLKSKVFNRFQLSSQ 627


>SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein
           Pvg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 389

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = -2

Query: 460 WAPVITSHQAGRELVDTSHHILTN 389
           WA V  SH    ELVD S+H L N
Sbjct: 153 WAFVSWSHDDLNELVDKSYHNLHN 176


>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 9/33 (27%), Positives = 20/33 (60%)
 Frame = +3

Query: 570 RVVVPTGANSQDVLPPVKPVAVLFRII*NCFHY 668
           R++    A ++DV PP K + ++  ++ +C +Y
Sbjct: 483 RILEICAAMTEDVRPPYKGIILMLNVLDSCTNY 515


>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
           Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +1

Query: 577 WYLLVRTHKTSYHQ*NQ*QFCFESFKIVFI 666
           WYLL + + +++   N     F+S KI+ I
Sbjct: 732 WYLLYQAYSSAHRPYNSLLCAFQSLKIILI 761


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,004,735
Number of Sequences: 5004
Number of extensions: 61721
Number of successful extensions: 98
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)