Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5410
         (544 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.06c |slx4||structure-specific endonuclease subunit |Schi...    32   0.048
SPAC637.03 |||conserved fungal protein|Schizosaccharomyces pombe...    27   1.8  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   2.4  
SPAC14C4.06c |||poly|Schizosaccharomyces pombe|chr 1|||Manual          26   4.1  
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po...    25   9.5  
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch...    25   9.5  
SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|ch...    25   9.5  

>SPAC688.06c |slx4||structure-specific endonuclease subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 419

 Score = 32.3 bits (70), Expect = 0.048
 Identities = 18/56 (32%), Positives = 22/56 (39%)
 Frame = -3

Query: 281 HCDAGYSIQVECAAVGFQRSTSTTQMHKLLVKTVEFTITSINSMIH*ILEFTGY*D 114
           H  AG+SI   C +  F    S T   K      EFT    N     +L + GY D
Sbjct: 213 HPSAGHSIDSTCQSNSFLEGDSATHKKKKTDNIKEFTSCEFNDRSRTLLNYAGYMD 268


>SPAC637.03 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 269

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +1

Query: 394 LSCCLHSCELFINLLNWFWSLLY*TPVQTF 483
           L C    C +F N+  WF++ +Y  P+  F
Sbjct: 164 LHCTGIGCRVFSNVFIWFFAAMYLVPILGF 193


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 453 IAILNTSSNFCILFSFSNPC 512
           I ++NT SN C+  +FS+ C
Sbjct: 44  IPLINTHSNLCLFSNFSHSC 63


>SPAC14C4.06c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 307

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 309 PACRDRYPTKYRNATHGSPHR 371
           PACR  +PTK RN T   P +
Sbjct: 262 PACRFIHPTKSRNMTWRPPSK 282


>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 449

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = +2

Query: 308 SCVPRPVSDEIQKRNSRIASSPSSENERPYRAVCIPVSSLSIY*IGFGHCYIKHQ 472
           S VP+  S+++   ++R    P +  E+P + V   + SL     G G  YIK++
Sbjct: 77  STVPKRYSNQLAVESNRQLKMPQNAREKPDKQVANRIFSLV---PGPGKHYIKYK 128


>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1031

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +2

Query: 251 LLECCSRHHSVIPTVTDNCSCVPRPVSDEIQKRNSRIASSPS 376
           +L+  S    VI T+    + VP  + DE+ K+N+  +   S
Sbjct: 459 VLDASSETIEVIQTIKKLQNQVPETIKDEVGKKNTAFSPGTS 500


>SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 703

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -3

Query: 116 DVPGTFQNPFTLPP 75
           DVPG FQ+PF   P
Sbjct: 548 DVPGVFQSPFQSAP 561


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,178,880
Number of Sequences: 5004
Number of extensions: 42992
Number of successful extensions: 120
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)