Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5410
(544 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0372 + 9522751-9522964,9523043-9523255,9523471-9523555,952... 28 4.2
02_01_0521 + 3768072-3768239,3768280-3768337,3769197-3769659,376... 28 4.2
01_06_0358 - 28677781-28677901,28678327-28678430,28678542-286786... 28 4.2
08_01_0465 + 4099721-4100556,4101505-4103614 27 7.3
05_01_0529 - 4561792-4561854,4561954-4562016,4562413-4562471,456... 27 7.3
10_05_0120 - 9360313-9360446,9360724-9360925 27 9.7
09_04_0747 + 19892090-19893304,19893471-19893602,19894168-198942... 27 9.7
03_05_0141 - 21210176-21212140 27 9.7
>02_02_0372 +
9522751-9522964,9523043-9523255,9523471-9523555,
9524373-9524448,9524974-9525150,9525473-9525566,
9526357-9526466,9526568-9526657,9526752-9526832,
9528468-9529277,9530777-9530896
Length = 689
Score = 28.3 bits (60), Expect = 4.2
Identities = 18/71 (25%), Positives = 29/71 (40%)
Frame = +2
Query: 209 VLCSSIAESPLLRILLECCSRHHSVIPTVTDNCSCVPRPVSDEIQKRNSRIASSPSSENE 388
+L + +PL R+LL CS S + + S P P S + + A +
Sbjct: 6 LLLLPVRSAPLRRLLLCRCSSSSSPAAAASASSSACPVPASSVLAPYHRAFARRMALAGV 65
Query: 389 RPYRAVCIPVS 421
P+ V + VS
Sbjct: 66 HPHHRVAVGVS 76
>02_01_0521 +
3768072-3768239,3768280-3768337,3769197-3769659,
3769736-3769990,3770763-3770934,3772260-3772910,
3773659-3774045,3774123-3774155,3774239-3774307,
3774388-3774463,3775135-3775223,3775442-3775615,
3775693-3775821
Length = 907
Score = 28.3 bits (60), Expect = 4.2
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +2
Query: 281 VIPTVTDNCSCVPRPVSDEIQKRNSRIASSPSSENERPYRAVCIPVSSLS 430
V+ +V + PVS E+ + N +++ P N RPY I V +S
Sbjct: 833 VVVSVKGTTRGINSPVSGEVVEVNDQLSDLPGLVNARPYETGWIIVVKIS 882
>01_06_0358 -
28677781-28677901,28678327-28678430,28678542-28678625,
28679221-28679265,28679523-28679594,28679721-28679759,
28679966-28680061,28680492-28680566,28681717-28681764,
28681888-28681971,28682141-28682341,28682394-28682561,
28683232-28683372,28683470-28683517,28683845-28684087,
28684184-28684297,28685134-28685163,28685361-28685951,
28686033-28686620,28686744-28686863,28687764-28687938,
28688397-28688562,28688653-28688755,28689227-28689319,
28690759-28690918,28691754-28691872
Length = 1275
Score = 28.3 bits (60), Expect = 4.2
Identities = 18/44 (40%), Positives = 24/44 (54%)
Frame = +2
Query: 296 TDNCSCVPRPVSDEIQKRNSRIASSPSSENERPYRAVCIPVSSL 427
T+N S VP PVS +++ NS S S+NE + C P SL
Sbjct: 539 TNNLSNVPYPVSGKVE--NSLDYSGDLSKNEDVQQTSCQPNQSL 580
>08_01_0465 + 4099721-4100556,4101505-4103614
Length = 981
Score = 27.5 bits (58), Expect = 7.3
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 12 VQNHKKYFFFKKLNILWLITFWWQRKGILKSPWYV 116
+ N K + + L ILW + W R G + SPW++
Sbjct: 758 LDNLHKIRYLEILGILWGMNVTWTRTGFI-SPWHL 791
>05_01_0529 -
4561792-4561854,4561954-4562016,4562413-4562471,
4562887-4563988
Length = 428
Score = 27.5 bits (58), Expect = 7.3
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -3
Query: 293 QWV*HCDAGYSIQVECAAVGFQRSTSTTQMH 201
QWV D+G+S +V+ A +GF S++ H
Sbjct: 137 QWVILPDSGWSDKVQTARLGFDPVVSSSHFH 167
>10_05_0120 - 9360313-9360446,9360724-9360925
Length = 111
Score = 27.1 bits (57), Expect = 9.7
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = +2
Query: 206 FVLCSSIAESPLLRILLECCSRHHSVIPTVTDNCSCVPRPVSDEIQKRNSR 358
F++ +S+++S L LL+CCSR V+ T T C P ++ K S+
Sbjct: 60 FIVTTSVSDSQLQ--LLQCCSRAPMVMATST----CYPSSLAQSGPKAMSK 104
>09_04_0747 +
19892090-19893304,19893471-19893602,19894168-19894215,
19894697-19894766,19894936-19894963,19896021-19896519
Length = 663
Score = 27.1 bits (57), Expect = 9.7
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = +2
Query: 227 AESPLLRILLECCSRHHSVIPT--VTDNCSCVPRPVSDEIQK 346
A + LRIL CCSRH V T V PR S+ I+K
Sbjct: 607 AVTTTLRIL-SCCSRHRDVAATAMVDPQLHPCPRHCSEAIEK 647
>03_05_0141 - 21210176-21212140
Length = 654
Score = 27.1 bits (57), Expect = 9.7
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +2
Query: 227 AESPLLRILLECCSRHHSV 283
AE+PL RI+L CS+H +
Sbjct: 449 AEAPLWRIVLGACSKHRDI 467
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,753,243
Number of Sequences: 37544
Number of extensions: 268650
Number of successful extensions: 644
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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