Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5409
         (301 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   0.78 
SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual      25   3.1  
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    25   3.1  
SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/ diacylg...    24   4.2  
SPAC23C4.15 |rpb5||DNA-directed RNA polymerase I, II and III sub...    24   4.2  
SPBC428.17c |||conserved fungal protein|Schizosaccharomyces pomb...    24   5.5  
SPCC191.03c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    24   5.5  
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi...    23   9.6  
SPAC8E11.09c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       23   9.6  
SPBPB2B2.06c |||phosphoprotein phosphatase |Schizosaccharomyces ...    23   9.6  
SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p...    23   9.6  

>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 26.6 bits (56), Expect = 0.78
 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 4/37 (10%)
 Frame = -3

Query: 128 SFARCLLHFY----FYGATIFNFNYLRIFTVIFLIFF 30
           S  RCLL F+    F+ +  F+F++L   + IF+++F
Sbjct: 111 SLFRCLLLFFFFLLFFLSFSFSFSFLFFLSQIFIVYF 147


>SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 478

 Score = 24.6 bits (51), Expect = 3.1
 Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = -3

Query: 131 TSFARCLL-HFYFYGATIFNFNYL 63
           TS  R L+  FY+YG   F+FNYL
Sbjct: 262 TSLGRLLIDFFYYYG---FSFNYL 282


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 24.6 bits (51), Expect = 3.1
 Identities = 11/36 (30%), Positives = 14/36 (38%)
 Frame = +3

Query: 156 YGFSRSINGAFRYLKYRSPSSPNPSLAAKGSTSKLT 263
           YGF  ++N        + PSSP      K  T   T
Sbjct: 152 YGFGTNVNNTLGIANGKEPSSPERVFLLKNQTESPT 187


>SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/
           diacylglycerol ethanolaminesphotranferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 386

 Score = 24.2 bits (50), Expect = 4.2
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 125 FARCLLHFYFYGATIFNF 72
           F R  L +Y YG+ ++NF
Sbjct: 209 FVRSFLPYYTYGSCLYNF 226


>SPAC23C4.15 |rpb5||DNA-directed RNA polymerase I, II and III
           subunit Rpb5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 24.2 bits (50), Expect = 4.2
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 261 LIYSSSPSPQATDLARTVTG 202
           LIY++S +P A  +  TVTG
Sbjct: 104 LIYANSMTPSAAKIIATVTG 123


>SPBC428.17c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 602

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 9/12 (75%), Positives = 12/12 (100%)
 Frame = +2

Query: 194 PQVPVTVLAKSV 229
           PQVPV++LAKS+
Sbjct: 280 PQVPVSILAKSL 291


>SPCC191.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 117

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -3

Query: 53  TVIFLIFFYCIDVWT 9
           +V+F  FF CID+WT
Sbjct: 103 SVLFQCFF-CIDIWT 116


>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 798

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = +3

Query: 126 ASKLSMISHHYGFSRSINGAFRYLKYRSPSSPNPSLAAKGSTSKLTHR 269
           +S  S  SH +       G  +     SPS+ +PS A+  S SK   +
Sbjct: 36  SSPSSSSSHDFESKEDAEGMNKDESAPSPSTSSPSSASSRSQSKYVRK 83


>SPAC8E11.09c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 151

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +3

Query: 183 AFRYLKYRSPSSP 221
           ++ Y+KYR+P SP
Sbjct: 79  SYYYIKYRTPDSP 91


>SPBPB2B2.06c |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 601

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -1

Query: 241 FAASDGFGEDGD 206
           +  SD FGEDGD
Sbjct: 499 YVTSDDFGEDGD 510


>SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -1

Query: 241 FAASDGFGEDGD 206
           +  SD FGEDGD
Sbjct: 499 YVTSDDFGEDGD 510


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,020,781
Number of Sequences: 5004
Number of extensions: 16973
Number of successful extensions: 48
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 73700136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)