Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5409
         (301 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1626 + 28223967-28225294,28225506-28225779,28225939-282262...    27   2.1  
12_02_0665 + 21670956-21671834,21672563-21672583                       27   3.6  
03_05_0822 - 27963849-27964544,27965043-27965091,27965372-279654...    26   4.7  
09_03_0158 - 12878690-12879687,12880115-12880178,12880580-12880645     25   8.3  
06_03_0715 - 23823427-23823525,23823616-23823822,23823907-238240...    25   8.3  
05_03_0134 + 8790409-8790421,8790716-8791023,8791836-8792153,879...    25   8.3  
04_04_0933 + 29495656-29496972,29497244-29497819,29499414-294996...    25   8.3  
01_06_1599 - 38539460-38539480,38539973-38540054,38540185-385402...    25   8.3  

>07_03_1626 +
           28223967-28225294,28225506-28225779,28225939-28226230,
           28226492-28226651,28226809-28226917,28227004-28227099
          Length = 752

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = +3

Query: 165 SRSINGAFRYLKYRSPSSPNPSLAAKGSTSKLTHRHRPLR 284
           SRS  G+ R LK   P  P+ S +A G     T    PLR
Sbjct: 30  SRSKRGSARPLKPSPPPRPSASSSAAGGGGATTFTRLPLR 69


>12_02_0665 + 21670956-21671834,21672563-21672583
          Length = 299

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 207 SPSSPNPSLAAKGSTSKLTHRHRPLRFS 290
           SP+SP P  +   S + L HR  P RFS
Sbjct: 32  SPASPLPFASRVSSAAPLRHRLPPPRFS 59


>03_05_0822 -
           27963849-27964544,27965043-27965091,27965372-27965480,
           27965979-27966006,27966086-27966276,27966418-27966532,
           27966955-27967206
          Length = 479

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +3

Query: 198 KYRSPSSPNPSLAAKGSTS 254
           K + PS PNPS+ +K S+S
Sbjct: 324 KKKRPSGPNPSIKSKASSS 342


>09_03_0158 - 12878690-12879687,12880115-12880178,12880580-12880645
          Length = 375

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 141 MISHHYGFSRSINGAFRYLKYRSPSSPNP 227
           M  H    S S NG  R LK+++  SP+P
Sbjct: 101 MHCHQVFNSNSTNGTSRLLKHQAKCSPHP 129


>06_03_0715 -
           23823427-23823525,23823616-23823822,23823907-23824017,
           23824124-23824322,23824410-23824495,23824940-23825098,
           23825204-23825302,23825385-23826578,23826666-23826734,
           23828042-23828812
          Length = 997

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 10/40 (25%), Positives = 25/40 (62%)
 Frame = -1

Query: 283 RNGLCLWVNLLVEPFAASDGFGEDGDRYLRYLKAPLMDRE 164
           ++G  +++++LVE     D F  +G+R++R+    + ++E
Sbjct: 158 QHGKTVFMDMLVEQTHEVDTFDSEGERHVRFTDTRVDEQE 197


>05_03_0134 +
           8790409-8790421,8790716-8791023,8791836-8792153,
           8793021-8793212,8793383-8793618,8793696-8793953,
           8794237-8794315,8797728-8797895
          Length = 523

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +3

Query: 201 YRSPSSPNPSLAAK 242
           Y SPS P+PSLA K
Sbjct: 74  YHSPSDPHPSLARK 87


>04_04_0933 +
           29495656-29496972,29497244-29497819,29499414-29499650,
           29499736-29500048,29500191-29500300
          Length = 850

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
 Frame = +3

Query: 168 RSINGAFRYLKYRSPSSPNPSLAAKGSTSKLTHRH--RPLRFSSD 296
           R +  A  +   R P   NP  A + ++  L HR   RP R  SD
Sbjct: 10  RDLLAADGFRNRRKPPDSNPPAAPRTTSMPLQHRRPSRPARSQSD 54


>01_06_1599 -
           38539460-38539480,38539973-38540054,38540185-38540255,
           38540359-38540489,38550539-38550614,38551229-38551588
          Length = 246

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +3

Query: 120 SEASKLSMISHHYGFSRSINGAFRYLKYRSPSSPNPSLAAKGSTS 254
           S + +L    HH G +  +   FR+L   S S+P+ S AA  ++S
Sbjct: 16  SPSPRLPPPLHHRGAAPPLR--FRFLSLSSSSAPSSSAAATANSS 58


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,591,105
Number of Sequences: 37544
Number of extensions: 108721
Number of successful extensions: 287
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 287
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 339576272
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)