Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5409
(301 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U79668-1|AAB49678.1| 916|Homo sapiens alpha1A-voltage-dependent... 27 8.2
U79667-1|AAB49677.1| 1182|Homo sapiens alpha1A-voltage-dependent... 27 8.2
U79666-1|AAB64179.1| 2505|Homo sapiens alpha1A-voltage-dependent... 27 8.2
U79665-1|AAB49676.1| 1194|Homo sapiens alpha1A-voltage-sensitive... 27 8.2
U79664-1|AAB49675.1| 949|Homo sapiens alpha1A-voltage-dependent... 27 8.2
U79663-1|AAB49674.1| 949|Homo sapiens alpha1A-voltage-dependent... 27 8.2
AK124806-1|BAC85955.1| 159|Homo sapiens protein ( Homo sapiens ... 27 8.2
AF100774-1|AAC77460.1| 980|Homo sapiens voltage-dependent P/Q t... 27 8.2
AF004884-1|AAB61613.1| 2510|Homo sapiens neuronal calcium channe... 27 8.2
AF004883-1|AAB61612.1| 2266|Homo sapiens neuronal calcium channe... 27 8.2
AC005305-1|AAC26839.1| 419|Homo sapiens CACNL1A4 protein. 27 8.2
AB035727-1|BAA94766.2| 2506|Homo sapiens alpha1A-voltage-depende... 27 8.2
AB035726-1|BAA94765.1| 2472|Homo sapiens alpha1A-voltage-depende... 27 8.2
>U79668-1|AAB49678.1| 916|Homo sapiens alpha1A-voltage-dependent
calcium channel protein.
Length = 916
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 113 LLHFYFYGATIFNFNYLRIFTVIFLIFF 30
+L FYGA++ N LR+F ++F F
Sbjct: 270 VLMMKFYGASVAYENALRVFNIVFTSLF 297
>U79667-1|AAB49677.1| 1182|Homo sapiens alpha1A-voltage-dependent
calcium channel protein.
Length = 1182
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 113 LLHFYFYGATIFNFNYLRIFTVIFLIFF 30
+L FYGA++ N LR+F ++F F
Sbjct: 270 VLMMKFYGASVAYENALRVFNIVFTSLF 297
>U79666-1|AAB64179.1| 2505|Homo sapiens alpha1A-voltage-dependent
calcium channel protein.
Length = 2505
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 113 LLHFYFYGATIFNFNYLRIFTVIFLIFF 30
+L FYGA++ N LR+F ++F F
Sbjct: 1582 VLMMKFYGASVAYENALRVFNIVFTSLF 1609
>U79665-1|AAB49676.1| 1194|Homo sapiens alpha1A-voltage-sensitive
calcium channel protein.
Length = 1194
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 113 LLHFYFYGATIFNFNYLRIFTVIFLIFF 30
+L FYGA++ N LR+F ++F F
Sbjct: 270 VLMMKFYGASVAYENALRVFNIVFTSLF 297
>U79664-1|AAB49675.1| 949|Homo sapiens alpha1A-voltage-dependent
calcium channel protein.
Length = 949
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 113 LLHFYFYGATIFNFNYLRIFTVIFLIFF 30
+L FYGA++ N LR+F ++F F
Sbjct: 270 VLMMKFYGASVAYENALRVFNIVFTSLF 297
>U79663-1|AAB49674.1| 949|Homo sapiens alpha1A-voltage-dependent
calcium channel protein.
Length = 949
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 113 LLHFYFYGATIFNFNYLRIFTVIFLIFF 30
+L FYGA++ N LR+F ++F F
Sbjct: 270 VLMMKFYGASVAYENALRVFNIVFTSLF 297
>AK124806-1|BAC85955.1| 159|Homo sapiens protein ( Homo sapiens
cDNA FLJ42816 fis, clone BRCAN2014881. ).
Length = 159
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +3
Query: 189 RYLKYRSPSSPNPSLAAKGST-SKLTHRHRPLRF 287
+YLKY P S + +GS +KLTH + + F
Sbjct: 7 KYLKYNLPDSQASKMPGRGSARAKLTHSGQSVSF 40
>AF100774-1|AAC77460.1| 980|Homo sapiens voltage-dependent P/Q type
calcium channel alpha 1A subunit protein.
Length = 980
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 113 LLHFYFYGATIFNFNYLRIFTVIFLIFF 30
+L FYGA++ N LR+F ++F F
Sbjct: 68 VLMMKFYGASVAYENALRVFNIVFTSLF 95
>AF004884-1|AAB61613.1| 2510|Homo sapiens neuronal calcium channel
alpha 1A subunit isoform A-1 protein.
Length = 2510
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 113 LLHFYFYGATIFNFNYLRIFTVIFLIFF 30
+L FYGA++ N LR+F ++F F
Sbjct: 1585 VLMMKFYGASVAYENALRVFNIVFTSLF 1612
>AF004883-1|AAB61612.1| 2266|Homo sapiens neuronal calcium channel
alpha 1A subunit isoform 1A-2 protein.
Length = 2266
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 113 LLHFYFYGATIFNFNYLRIFTVIFLIFF 30
+L FYGA++ N LR+F ++F F
Sbjct: 1585 VLMMKFYGASVAYENALRVFNIVFTSLF 1612
>AC005305-1|AAC26839.1| 419|Homo sapiens CACNL1A4 protein.
Length = 419
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 113 LLHFYFYGATIFNFNYLRIFTVIFLIFF 30
+L FYGA++ N LR+F ++F F
Sbjct: 350 VLMMKFYGASVAYENALRVFNIVFTSLF 377
>AB035727-1|BAA94766.2| 2506|Homo sapiens alpha1A-voltage-dependent
calcium channel protein.
Length = 2506
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 113 LLHFYFYGATIFNFNYLRIFTVIFLIFF 30
+L FYGA++ N LR+F ++F F
Sbjct: 1581 VLMMKFYGASVAYENALRVFNIVFTSLF 1608
>AB035726-1|BAA94765.1| 2472|Homo sapiens alpha1A-voltage-dependent
calcium channel protein.
Length = 2472
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 113 LLHFYFYGATIFNFNYLRIFTVIFLIFF 30
+L FYGA++ N LR+F ++F F
Sbjct: 1582 VLMMKFYGASVAYENALRVFNIVFTSLF 1609
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,004,933
Number of Sequences: 237096
Number of extensions: 620157
Number of successful extensions: 1262
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1262
length of database: 76,859,062
effective HSP length: 76
effective length of database: 58,839,766
effective search space used: 1353314618
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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