Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5409
         (301 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014297-4737|AAF57145.2| 1284|Drosophila melanogaster CG11339-P...    30   0.47 
AF069781-1|AAC26858.1|  338|Drosophila melanogaster Bem46-like p...    30   0.62 
AE014134-529|AAF51169.1|  338|Drosophila melanogaster CG18642-PA...    30   0.62 
AY094828-1|AAM11181.1| 1765|Drosophila melanogaster LD40380p pro...    29   1.4  
AY089325-1|AAL90063.1|  263|Drosophila melanogaster AT13643p pro...    29   1.4  
AE014297-3524|AAF56278.2| 2232|Drosophila melanogaster CG31132-P...    29   1.4  
AE014134-1819|AAF52900.3|  174|Drosophila melanogaster CG18144-P...    28   1.9  
BT023770-1|AAZ41778.1|  931|Drosophila melanogaster LP23752p pro...    28   2.5  
AY195738-1|AAO43730.1|  917|Drosophila melanogaster kekkon5 prec...    28   2.5  
AE014298-2840|AAN09488.1|  931|Drosophila melanogaster CG12199-P...    28   2.5  
AE014298-2839|AAF48953.2|  931|Drosophila melanogaster CG12199-P...    28   2.5  
X56811-1|CAA40148.1| 1408|Drosophila melanogaster Serrate protei...    27   5.8  
M35759-1|AAA28938.1| 1404|Drosophila melanogaster protein ( D.me...    27   5.8  
AE014297-4084|AAF56678.2| 1407|Drosophila melanogaster CG6127-PA...    27   5.8  
AY094885-1|AAM11238.1|  376|Drosophila melanogaster RE52283p pro...    26   7.7  
AE014297-472|AAN13360.2| 1091|Drosophila melanogaster CG15186-PB...    26   7.7  
AE014297-471|AAS65115.1|  923|Drosophila melanogaster CG15186-PC...    26   7.7  
AE014297-470|AAF54118.2| 1072|Drosophila melanogaster CG15186-PA...    26   7.7  

>AE014297-4737|AAF57145.2| 1284|Drosophila melanogaster CG11339-PA
           protein.
          Length = 1284

 Score = 30.3 bits (65), Expect = 0.47
 Identities = 18/60 (30%), Positives = 29/60 (48%)
 Frame = +3

Query: 117 ASEASKLSMISHHYGFSRSINGAFRYLKYRSPSSPNPSLAAKGSTSKLTHRHRPLRFSSD 296
           +S A   S  SHH+   R+ + +  + + R  SS   S ++  S S   H+HR  R S +
Sbjct: 488 SSSAGATSSTSHHHRQQRASSSSASHQQQRYRSSSVESHSSNDSRSTRKHKHRHRRTSDN 547


>AF069781-1|AAC26858.1|  338|Drosophila melanogaster Bem46-like
           protein protein.
          Length = 338

 Score = 29.9 bits (64), Expect = 0.62
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -3

Query: 134 LTSFARCLLHFYFYGATIFNFNYLRIFT-VIFLIFFYCIDV 15
           L +F  C + +YFYG     +  L +F  +I LIF+Y  D+
Sbjct: 19  LAAFLLCFIFYYFYG----GYMTLALFAGIILLIFYYAQDL 55


>AE014134-529|AAF51169.1|  338|Drosophila melanogaster CG18642-PA
           protein.
          Length = 338

 Score = 29.9 bits (64), Expect = 0.62
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -3

Query: 134 LTSFARCLLHFYFYGATIFNFNYLRIFT-VIFLIFFYCIDV 15
           L +F  C + +YFYG     +  L +F  +I LIF+Y  D+
Sbjct: 19  LAAFLLCFIFYYFYG----GYMTLALFAGIILLIFYYAQDL 55


>AY094828-1|AAM11181.1| 1765|Drosophila melanogaster LD40380p protein.
          Length = 1765

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +3

Query: 201  YRSPSSPNPSLAAKGSTSKLTHRHRPLR 284
            Y SPS+  P   AK S+S  T + RPLR
Sbjct: 1614 YVSPSNGRPRRKAKTSSSSATTQERPLR 1641


>AY089325-1|AAL90063.1|  263|Drosophila melanogaster AT13643p
           protein.
          Length = 263

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +3

Query: 201 YRSPSSPNPSLAAKGSTSKLTHRHRPLR 284
           Y SPS+  P   AK S+S  T + RPLR
Sbjct: 147 YVSPSNGRPRRKAKTSSSSATTQERPLR 174


>AE014297-3524|AAF56278.2| 2232|Drosophila melanogaster CG31132-PA
            protein.
          Length = 2232

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +3

Query: 201  YRSPSSPNPSLAAKGSTSKLTHRHRPLR 284
            Y SPS+  P   AK S+S  T + RPLR
Sbjct: 2081 YVSPSNGRPRRKAKTSSSSATTQERPLR 2108


>AE014134-1819|AAF52900.3|  174|Drosophila melanogaster CG18144-PA
           protein.
          Length = 174

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +3

Query: 165 SRSINGAFRYLKYRSPSSPNPSLAAKGSTSKL 260
           ++SIN AF YL+ + P+ P  +  +K  T KL
Sbjct: 71  TQSINNAFSYLREKIPNVPTDTKLSKIKTLKL 102


>BT023770-1|AAZ41778.1|  931|Drosophila melanogaster LP23752p
           protein.
          Length = 931

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = +3

Query: 177 NGAFRYLKYRSPSSPNPSLAAKGSTSKL 260
           +G+ +  +++SP+SPNPS     +T++L
Sbjct: 719 HGSIQLSEFQSPTSPNPSETGTATTAEL 746


>AY195738-1|AAO43730.1|  917|Drosophila melanogaster kekkon5
           precursor protein.
          Length = 917

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = +3

Query: 177 NGAFRYLKYRSPSSPNPSLAAKGSTSKL 260
           +G+ +  +++SP+SPNPS     +T++L
Sbjct: 705 HGSIQLSEFQSPTSPNPSETGTATTAEL 732


>AE014298-2840|AAN09488.1|  931|Drosophila melanogaster CG12199-PB,
           isoform B protein.
          Length = 931

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = +3

Query: 177 NGAFRYLKYRSPSSPNPSLAAKGSTSKL 260
           +G+ +  +++SP+SPNPS     +T++L
Sbjct: 719 HGSIQLSEFQSPTSPNPSETGTATTAEL 746


>AE014298-2839|AAF48953.2|  931|Drosophila melanogaster CG12199-PA,
           isoform A protein.
          Length = 931

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = +3

Query: 177 NGAFRYLKYRSPSSPNPSLAAKGSTSKL 260
           +G+ +  +++SP+SPNPS     +T++L
Sbjct: 719 HGSIQLSEFQSPTSPNPSETGTATTAEL 746


>X56811-1|CAA40148.1| 1408|Drosophila melanogaster Serrate protein
            protein.
          Length = 1408

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 216  SPNPSLAAKGSTSKLTHRHRPLRFSSDF 299
            +P P LAA  ++S   HR +PL    DF
Sbjct: 1308 NPAPELAASAASSSALHRSQPLFPPCDF 1335


>M35759-1|AAA28938.1| 1404|Drosophila melanogaster protein (
            D.melanogaster serrate(Ser) mRNA, complete cds. ).
          Length = 1404

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 216  SPNPSLAAKGSTSKLTHRHRPLRFSSDF 299
            +P P LAA  ++S   HR +PL    DF
Sbjct: 1304 NPAPELAASAASSSALHRSQPLFPPCDF 1331


>AE014297-4084|AAF56678.2| 1407|Drosophila melanogaster CG6127-PA
            protein.
          Length = 1407

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 216  SPNPSLAAKGSTSKLTHRHRPLRFSSDF 299
            +P P LAA  ++S   HR +PL    DF
Sbjct: 1307 NPAPELAASAASSSALHRSQPLFPPCDF 1334


>AY094885-1|AAM11238.1|  376|Drosophila melanogaster RE52283p
           protein.
          Length = 376

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +3

Query: 114 TASEASKLSMISHHYGFSRSINGAFRYLKYRSPSSPNPS 230
           T+S  +    + H  G+  ++   F   KY  PSSP+ S
Sbjct: 272 TSSSTTTGKTMRHTNGWDYNLQSPFTQRKYNDPSSPSRS 310


>AE014297-472|AAN13360.2| 1091|Drosophila melanogaster CG15186-PB,
           isoform B protein.
          Length = 1091

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +3

Query: 114 TASEASKLSMISHHYGFSRSINGAFRYLKYRSPSSPNPS 230
           T+S  +    + H  G+  ++   F   KY  PSSP+ S
Sbjct: 291 TSSSTTTGKTMRHTNGWDYNLQSPFTQRKYNDPSSPSRS 329


>AE014297-471|AAS65115.1|  923|Drosophila melanogaster CG15186-PC,
           isoform C protein.
          Length = 923

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +3

Query: 114 TASEASKLSMISHHYGFSRSINGAFRYLKYRSPSSPNPS 230
           T+S  +    + H  G+  ++   F   KY  PSSP+ S
Sbjct: 272 TSSSTTTGKTMRHTNGWDYNLQSPFTQRKYNDPSSPSRS 310


>AE014297-470|AAF54118.2| 1072|Drosophila melanogaster CG15186-PA,
           isoform A protein.
          Length = 1072

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +3

Query: 114 TASEASKLSMISHHYGFSRSINGAFRYLKYRSPSSPNPS 230
           T+S  +    + H  G+  ++   F   KY  PSSP+ S
Sbjct: 272 TSSSTTTGKTMRHTNGWDYNLQSPFTQRKYNDPSSPSRS 310


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,992,055
Number of Sequences: 53049
Number of extensions: 179555
Number of successful extensions: 624
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 24,988,368
effective HSP length: 73
effective length of database: 21,115,791
effective search space used: 549010566
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)