Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5409
         (301 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U13072-3|AAK31396.4|  326|Caenorhabditis elegans Serpentine rece...    28   1.4  
AF038608-6|AAT92088.1|  312|Caenorhabditis elegans Serpentine re...    27   3.3  
AC006677-3|AAF39952.2|  298|Caenorhabditis elegans Serpentine re...    26   4.4  
Z70718-10|CAA94679.1|  512|Caenorhabditis elegans Hypothetical p...    26   5.8  
Z68879-11|CAA93090.1|  512|Caenorhabditis elegans Hypothetical p...    26   5.8  
AC024808-1|AAK29927.1|  309|Caenorhabditis elegans Hypothetical ...    26   5.8  
U88183-2|AAM69080.1| 1273|Caenorhabditis elegans Sensory axon gu...    25   7.6  
U88183-1|AAB52657.2| 1269|Caenorhabditis elegans Sensory axon gu...    25   7.6  
AF041053-1|AAC38848.1| 1273|Caenorhabditis elegans SAX-3 protein.      25   7.6  

>U13072-3|AAK31396.4|  326|Caenorhabditis elegans Serpentine
           receptor, class e (epsilon)protein 3 protein.
          Length = 326

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -3

Query: 104 FYFYGATIFNFNYLRIFTVIFLIFFYCIDVWTSS 3
           F    AT+FNF  L   T++F +F+Y I  + S+
Sbjct: 248 FLNVAATLFNFCVLIYGTLVFSLFYYLIPQFRSA 281


>AF038608-6|AAT92088.1|  312|Caenorhabditis elegans Serpentine
           receptor, class z protein82 protein.
          Length = 312

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 11/55 (20%)
 Frame = -3

Query: 134 LTSFARCLLHFY-FYG--ATIFN---FNYLRIFTVI-----FLIFFYCIDVWTSS 3
           L SF RCL+ F+   G    +F    F Y+R+F +I      +++FY   +W+ S
Sbjct: 121 LLSFQRCLVFFFPNLGKLVAVFQKQFFKYIRLFYLICFGTELIMYFYSPTIWSKS 175


>AC006677-3|AAF39952.2|  298|Caenorhabditis elegans Serpentine
           receptor, class x protein28 protein.
          Length = 298

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 107 HFYFYGATIFNFNYLRIFTVIFLIFFY 27
           H +    T+F  N++ IF++IF I  Y
Sbjct: 113 HIFSNSKTVFYRNFIWIFSIIFCITLY 139


>Z70718-10|CAA94679.1|  512|Caenorhabditis elegans Hypothetical
           protein C04G2.11 protein.
          Length = 512

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -3

Query: 110 LHFYFYGATIF-NFNYLRIFTVIFLIFFYCIDV 15
           LH +    T+F N N LR+F  IF+  FY  +V
Sbjct: 17  LHRFLLPQTLFSNKNILRMFFHIFMWLFYLSEV 49


>Z68879-11|CAA93090.1|  512|Caenorhabditis elegans Hypothetical
           protein C04G2.11 protein.
          Length = 512

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -3

Query: 110 LHFYFYGATIF-NFNYLRIFTVIFLIFFYCIDV 15
           LH +    T+F N N LR+F  IF+  FY  +V
Sbjct: 17  LHRFLLPQTLFSNKNILRMFFHIFMWLFYLSEV 49


>AC024808-1|AAK29927.1|  309|Caenorhabditis elegans Hypothetical
           protein Y53G8AM.4 protein.
          Length = 309

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = -3

Query: 134 LTSFARCLLHFYF---YGATIFNFNYLRIFTVIFLIFFYCIDVWTSS 3
           + +FAR     YF   YGA+IF   ++ +  V  ++ F C  V+ +S
Sbjct: 86  MLTFARFAPQVYFLFGYGASIFYILFVALNCVSSILQFGCFHVYITS 132


>U88183-2|AAM69080.1| 1273|Caenorhabditis elegans Sensory axon
            guidance protein 3,isoform b protein.
          Length = 1273

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -2

Query: 285  NAMACVYGLIYSSSPSPQAT 226
            NAM+  YG  Y   PSP AT
Sbjct: 994  NAMSTFYGNQYHDDPSPYAT 1013


>U88183-1|AAB52657.2| 1269|Caenorhabditis elegans Sensory axon
            guidance protein 3,isoform a protein.
          Length = 1269

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -2

Query: 285  NAMACVYGLIYSSSPSPQAT 226
            NAM+  YG  Y   PSP AT
Sbjct: 994  NAMSTFYGNQYHDDPSPYAT 1013


>AF041053-1|AAC38848.1| 1273|Caenorhabditis elegans SAX-3 protein.
          Length = 1273

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -2

Query: 285  NAMACVYGLIYSSSPSPQAT 226
            NAM+  YG  Y   PSP AT
Sbjct: 994  NAMSTFYGNQYHDDPSPYAT 1013


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,625,766
Number of Sequences: 27780
Number of extensions: 93835
Number of successful extensions: 280
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 280
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 313072342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)