Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5408
         (632 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr...    27   3.0  
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb...    26   3.9  
SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter Zhf1|Schizosacc...    25   9.1  
SPBC36.01c |||spermidine family transporter |Schizosaccharomyces...    25   9.1  

>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 553

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 6/42 (14%)
 Frame = +1

Query: 262 SKEFCIFFLFKTMTSVVSIKKMLSK------HYKFTAIGDPY 369
           S +FC+ F FKT+ S++ + K L +      HY      D Y
Sbjct: 52  SLKFCVLFSFKTVYSLLKLIKTLIRKLLYCFHYALDLFADEY 93


>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1073

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 4/68 (5%)
 Frame = -3

Query: 516 KNG*KCNQKIHLKIEQDSIPVIRIHNNCIFDTT--TPSPLTVQIQSCHTILIWIT--YCS 349
           +NG KC     +K  + + P IRI +  + DT       L   I  C    +W T  +  
Sbjct: 85  ENG-KCYLLQLVKTPEKAFPTIRIRDEFVLDTRMYNHEQLGKSIDLCPNASLWATNSFAG 143

Query: 348 EFVMF*EH 325
           + V F  H
Sbjct: 144 DIVFFFSH 151


>SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter
           Zhf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +1

Query: 418 GCIKNAIIVN-TDYRNRILLDFKVYFLVTFLAIF 516
           G I  A+ +  TDY  R L D  +  L+TF+ +F
Sbjct: 246 GVISAALFIKYTDYSWRFLFDPCISILLTFIILF 279


>SPBC36.01c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 580

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 7/29 (24%), Positives = 20/29 (68%)
 Frame = +1

Query: 94  EIYRKSNDEHIIILRSLIMSYIILPIKIV 180
           ++    ++E  +  R +IM+Y+++P+K++
Sbjct: 338 QLVHARSEEESLSARDIIMNYLLIPLKML 366


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,631,509
Number of Sequences: 5004
Number of extensions: 53599
Number of successful extensions: 127
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)