Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5407
(666 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 248 4e-67
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 107 1e-24
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 89 4e-19
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 85 1e-17
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 69 5e-13
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 60 4e-10
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 54 2e-08
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 42 6e-05
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 42 8e-05
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 41 2e-04
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 40 2e-04
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc... 39 6e-04
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 38 0.001
SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1 |Schiz... 38 0.001
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 34 0.016
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 33 0.037
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 32 0.065
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 32 0.065
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p... 31 0.20
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po... 31 0.20
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 28 1.4
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex... 28 1.4
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 27 1.8
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S... 27 3.2
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 3.2
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 27 3.2
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 26 5.6
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha... 26 5.6
SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce... 26 5.6
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 25 7.4
SPCC1020.03 |||mitochondrial iron ion transporter|Schizosaccharo... 25 9.8
SPCC4G3.08 |psk1||serine/threonine protein kinase Psk1|Schizosac... 25 9.8
SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|... 25 9.8
SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p... 25 9.8
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 248 bits (608), Expect = 4e-67
Identities = 125/191 (65%), Positives = 145/191 (75%)
Frame = +3
Query: 90 EGFRPYYITKIEELQLIVAEKSQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVV 269
E YY KI++ +L + +K+QNLRRL+AQRN LNA+VR+LR GSYVGEV+
Sbjct: 14 ENIVQYYTQKIQDAELAILQKTQNLRRLEAQRNGLNARVRLLREEIQLLQEPGSYVGEVI 73
Query: 270 KPMDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSL 449
K M K KVLVKVHPEGK+VVD+ ++DI ++ N RVALRN+SY L KILPNKVDPLVSL
Sbjct: 74 KTMGKNKVLVKVHPEGKYVVDISPDIDIKEIKPNIRVALRNDSYQLIKILPNKVDPLVSL 133
Query: 450 MMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELF*CPLGLRNQKESYCMGLRALEK 629
MMVEK+PDSTYEMVGGL+KQIKEIKEVIELPVKHPELF LG+ K G K
Sbjct: 134 MMVEKIPDSTYEMVGGLEKQIKEIKEVIELPVKHPELF-ESLGIPQPKGILLYGPPGTGK 192
Query: 630 TLLARAVAHHT 662
TLLARAVAHHT
Sbjct: 193 TLLARAVAHHT 203
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 107 bits (258), Expect = 1e-24
Identities = 59/140 (42%), Positives = 87/140 (62%)
Frame = +3
Query: 246 GSYVGEVVKPMDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPN 425
G +GEV+K +D ++ +VK ++VV NVD + + RV+L + T+ +ILP
Sbjct: 53 GQIIGEVLKQLDSERFIVKASSGPRYVVGCRNNVDQSHLVQGVRVSLDMTTLTIMRILPR 112
Query: 426 KVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELF*CPLGLRNQKESYC 605
+VDPLV M +E D ++ VGGL++QI+E++EVIELP+K+PELF +G++ K
Sbjct: 113 EVDPLVYNMSIEDPGDISFAGVGGLNEQIRELREVIELPLKNPELF-LRVGIKPPKGVLL 171
Query: 606 MGLRALEKTLLARAVAHHTG 665
G KTLLARAVA G
Sbjct: 172 YGPPGTGKTLLARAVAASLG 191
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 89.4 bits (212), Expect = 4e-19
Identities = 50/128 (39%), Positives = 69/128 (53%)
Frame = +3
Query: 279 DKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMV 458
+K ++ + KFVV L + V D+ RV Y + LP K+DP V++M V
Sbjct: 111 EKNAYVINLKQIAKFVVSLGERVSPTDIEEGMRVGCDRNKYAIQLPLPPKIDPSVTMMQV 170
Query: 459 EKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELF*CPLGLRNQKESYCMGLRALEKTLL 638
E+ PD TY VGG +QI+ ++EV+ELP+ PE F LG+ K G KTL
Sbjct: 171 EEKPDVTYGDVGGCKEQIERLREVVELPLLSPERF-VKLGIDPPKGIMLYGPPGTGKTLC 229
Query: 639 ARAVAHHT 662
ARAVA+ T
Sbjct: 230 ARAVANRT 237
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 84.6 bits (200), Expect = 1e-17
Identities = 54/182 (29%), Positives = 95/182 (52%)
Frame = +3
Query: 117 KIEELQLIVAEKSQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVL 296
+I + L+ E QN RL+ Q + + G+ + E++ D ++
Sbjct: 74 RIHDHLLMEEEYVQNQERLKPQDERTQEERNRVDEIRGTPMSVGT-LEEIID--DDHAIV 130
Query: 297 VKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDS 476
PE + V + VD + + C V L +++ ++ +L + DP++++M ++K P
Sbjct: 131 STAGPE--YYVSIMSFVDKDMLEPGCSVLLHHKAMSIVGLLLDDTDPMINVMKLDKAPTE 188
Query: 477 TYEMVGGLDKQIKEIKEVIELPVKHPELF*CPLGLRNQKESYCMGLRALEKTLLARAVAH 656
+Y +GGL+ QI+EIKE +ELP+ HPEL+ +G++ K G KTLLA+AVA+
Sbjct: 189 SYADIGGLESQIQEIKEAVELPLTHPELY-EEMGIKPPKGVILYGAPGTGKTLLAKAVAN 247
Query: 657 HT 662
T
Sbjct: 248 QT 249
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 69.3 bits (162), Expect = 5e-13
Identities = 40/136 (29%), Positives = 73/136 (53%)
Frame = +3
Query: 255 VGEVVKPMDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVD 434
+G+ ++ +D+ +V +VV + +D + + VAL+ S L ILP + D
Sbjct: 58 IGQFLEAIDQNTAIVGSTTGSNYVVRILSTLDRELLKPSASVALQRHSNALVDILPPEAD 117
Query: 435 PLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELF*CPLGLRNQKESYCMGL 614
+S++ ++ PD +Y VGGLD Q +E++E +ELP+ +L+ +G+ + G
Sbjct: 118 SSISMLRPDERPDVSYADVGGLDVQKQEVREAVELPLTQGDLY-RQIGIDPPRGVLLYGP 176
Query: 615 RALEKTLLARAVAHHT 662
KT+L +AVA+ T
Sbjct: 177 PGTGKTMLVKAVANST 192
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 59.7 bits (138), Expect = 4e-10
Identities = 38/123 (30%), Positives = 60/123 (48%)
Frame = +3
Query: 285 KKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVEK 464
K ++K + L V+ ++ + + +SY + LP++ D V M V++
Sbjct: 119 KSAVIKTSTRQTIFLPLIGLVEPEELHPGDLIGVNKDSYLIIDKLPSEYDSRVKAMEVDE 178
Query: 465 VPDSTYEMVGGLDKQIKEIKEVIELPVKHPELF*CPLGLRNQKESYCMGLRALEKTLLAR 644
P Y +GGL KQI+E+ E I LP++ + F LG++ K G KTLLAR
Sbjct: 179 KPTERYSDIGGLSKQIEELFEAIVLPMQQADKF-RKLGVKPPKGCLMFGPPGTGKTLLAR 237
Query: 645 AVA 653
A A
Sbjct: 238 ACA 240
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 54.0 bits (124), Expect = 2e-08
Identities = 25/62 (40%), Positives = 42/62 (67%)
Frame = +3
Query: 480 YEMVGGLDKQIKEIKEVIELPVKHPELF*CPLGLRNQKESYCMGLRALEKTLLARAVAHH 659
Y+ +GG +Q+ +I+E++ELP++HP+LF +G++ + G KTL+ARAVA+
Sbjct: 223 YDDIGGCRRQMAQIRELVELPLRHPQLF-KSIGIKPPRGILMYGPPGTGKTLMARAVANE 281
Query: 660 TG 665
TG
Sbjct: 282 TG 283
Score = 47.2 bits (107), Expect = 2e-06
Identities = 37/135 (27%), Positives = 69/135 (51%)
Frame = +3
Query: 252 YVGEVVKPMDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKV 431
YVG + + + + ++ E ++DLD++ +V + V + N + L P+ +
Sbjct: 426 YVGSDLASLCSEAAMQQIR-EKMDMIDLDEDEIDAEVLDSLGVTMDNFRFALGSSNPSAL 484
Query: 432 DPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELF*CPLGLRNQKESYCMG 611
V VE VP+ +E +GGL++ +E++E +++PV + E F G+ K G
Sbjct: 485 RETV----VE-VPNVRWEDIGGLEEVKRELRETVQMPVMYAEKF-LRFGVTPSKGVLFFG 538
Query: 612 LRALEKTLLARAVAH 656
KTLLA+A+A+
Sbjct: 539 PPGTGKTLLAKAIAN 553
Score = 36.7 bits (81), Expect = 0.003
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = +2
Query: 572 FGIAQPKGVLLYGPPGTGKDIIS 640
FG+ KGVL +GPPGTGK +++
Sbjct: 526 FGVTPSKGVLFFGPPGTGKTLLA 548
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 42.3 bits (95), Expect = 6e-05
Identities = 23/69 (33%), Positives = 37/69 (53%)
Frame = +3
Query: 459 EKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELF*CPLGLRNQKESYCMGLRALEKTLL 638
E D + +GGLD I E+ E++ +P+KHPE++ G+ + G KT+L
Sbjct: 166 EPPSDISLSDIGGLDDCINELLELVAMPIKHPEVY-QYTGIHPPRGVLLHGPPGCGKTML 224
Query: 639 ARAVAHHTG 665
A A+A+ G
Sbjct: 225 ANALANELG 233
Score = 34.7 bits (76), Expect = 0.012
Identities = 13/22 (59%), Positives = 18/22 (81%)
Frame = +2
Query: 575 GIAQPKGVLLYGPPGTGKDIIS 640
GI+ P GVLL+GPPG GK +++
Sbjct: 522 GISAPTGVLLWGPPGCGKTLLA 543
Score = 33.5 bits (73), Expect = 0.028
Identities = 24/79 (30%), Positives = 36/79 (45%)
Frame = +3
Query: 426 KVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELF*CPLGLRNQKESYC 605
KV P VP ++ +G L E++ I P+K PEL+ +G+
Sbjct: 473 KVQPSSKREGFATVPGVSWNNIGALKSIRVELQMAIVQPIKRPELY-QSVGISAPTGVLL 531
Query: 606 MGLRALEKTLLARAVAHHT 662
G KTLLA+AVA+ +
Sbjct: 532 WGPPGCGKTLLAKAVANES 550
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 41.9 bits (94), Expect = 8e-05
Identities = 22/59 (37%), Positives = 36/59 (61%)
Frame = +3
Query: 477 TYEMVGGLDKQIKEIKEVIELPVKHPELF*CPLGLRNQKESYCMGLRALEKTLLARAVA 653
++E VGGLD I ++KE++ LP+ +PE+F ++ + G KTL+ARA+A
Sbjct: 264 SFESVGGLDNYINQLKEMVMLPLLYPEIF-QRFNMQPPRGVLFHGPPGTGKTLMARALA 321
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 40.7 bits (91), Expect = 2e-04
Identities = 21/59 (35%), Positives = 34/59 (57%)
Frame = +3
Query: 477 TYEMVGGLDKQIKEIKEVIELPVKHPELF*CPLGLRNQKESYCMGLRALEKTLLARAVA 653
T+ +GGL QI +I++++ELP ++PELF + + G KT++ RAVA
Sbjct: 277 TFSSIGGLQAQIAQIRDIVELPFQNPELFKF-FNIMPPRGVLLYGPPGTGKTMVMRAVA 334
Score = 39.9 bits (89), Expect = 3e-04
Identities = 22/66 (33%), Positives = 36/66 (54%)
Frame = +3
Query: 468 PDSTYEMVGGLDKQIKEIKEVIELPVKHPELF*CPLGLRNQKESYCMGLRALEKTLLARA 647
P+ + +GG ++ +++KE +E P+ H E F LG+R K G KT+ A+A
Sbjct: 543 PNVHWSDIGGQEEVKQKLKESVEWPLTHGETF-SRLGVRPPKGVLLYGPPGCSKTITAKA 601
Query: 648 VAHHTG 665
+A TG
Sbjct: 602 IATETG 607
Score = 35.1 bits (77), Expect = 0.009
Identities = 14/20 (70%), Positives = 15/20 (75%)
Frame = +2
Query: 575 GIAQPKGVLLYGPPGTGKDI 634
G+ PKGVLLYGPPG K I
Sbjct: 578 GVRPPKGVLLYGPPGCSKTI 597
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 40.3 bits (90), Expect = 2e-04
Identities = 22/63 (34%), Positives = 37/63 (58%)
Frame = +3
Query: 465 VPDSTYEMVGGLDKQIKEIKEVIELPVKHPELF*CPLGLRNQKESYCMGLRALEKTLLAR 644
VP ++ +GGL++ +++ ++LP++ PELF GL+ + G KTLLA+
Sbjct: 649 VPKVNWDDIGGLEEAKTVLRDTLQLPLQFPELF--SQGLKPRSGVLLYGPPGTGKTLLAK 706
Query: 645 AVA 653
AVA
Sbjct: 707 AVA 709
Score = 34.3 bits (75), Expect = 0.016
Identities = 13/22 (59%), Positives = 17/22 (77%)
Frame = +2
Query: 575 GIAQPKGVLLYGPPGTGKDIIS 640
G+ GVLLYGPPGTGK +++
Sbjct: 684 GLKPRSGVLLYGPPGTGKTLLA 705
>SPAC1834.11c |sec18||secretory pathway protein Sec18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 792
Score = 39.1 bits (87), Expect = 6e-04
Identities = 16/30 (53%), Positives = 21/30 (70%)
Frame = +2
Query: 551 PRAVLMPFGIAQPKGVLLYGPPGTGKDIIS 640
P ++ GI KG+LLYGPPGTGK +I+
Sbjct: 292 PPGMVEKLGINHVKGILLYGPPGTGKTLIA 321
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 37.9 bits (84), Expect = 0.001
Identities = 25/76 (32%), Positives = 40/76 (52%)
Frame = +3
Query: 438 LVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELF*CPLGLRNQKESYCMGLR 617
L S ++VEK P+ ++ + GL+ + +KE + LP+K P+LF G + G
Sbjct: 115 LTSAILVEK-PNVRWDDIAGLENAKEALKETVLLPIKLPQLF--SHGRKPWSGILLYGPP 171
Query: 618 ALEKTLLARAVAHHTG 665
K+ LA+AVA G
Sbjct: 172 GTGKSYLAKAVATEAG 187
Score = 31.5 bits (68), Expect = 0.11
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = +2
Query: 593 GVLLYGPPGTGKDIIS 640
G+LLYGPPGTGK ++
Sbjct: 164 GILLYGPPGTGKSYLA 179
>SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 355
Score = 37.9 bits (84), Expect = 0.001
Identities = 22/79 (27%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Frame = +3
Query: 423 NKVDPLV-SLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELF*CPLGLRN-QKE 596
N+ + +V S +++ D +++ +GG+D+ + ++ + + P+K+PE+F GL + K
Sbjct: 68 NEYEQIVASQLVLPSEIDVSFDDIGGMDEHVNQLLQDVLFPLKYPEVFDTHGGLLSCPKG 127
Query: 597 SYCMGLRALEKTLLARAVA 653
G KT+LA+A+A
Sbjct: 128 LLLYGPPGCGKTMLAKALA 146
Score = 33.5 bits (73), Expect = 0.028
Identities = 12/18 (66%), Positives = 16/18 (88%)
Frame = +2
Query: 587 PKGVLLYGPPGTGKDIIS 640
PKG+LLYGPPG GK +++
Sbjct: 125 PKGLLLYGPPGCGKTMLA 142
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 34.3 bits (75), Expect = 0.016
Identities = 19/58 (32%), Positives = 33/58 (56%)
Frame = +3
Query: 480 YEMVGGLDKQIKEIKEVIELPVKHPELF*CPLGLRNQKESYCMGLRALEKTLLARAVA 653
+ +GGL+ I ++KE++ LP+ +PE+F L + + G KTL+AR +A
Sbjct: 371 FNSIGGLEDIILQLKEMVMLPLLYPEVF-LHLHITPPRGVLFHGPPGTGKTLMARVLA 427
Score = 34.3 bits (75), Expect = 0.016
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +2
Query: 560 VLMPFGIAQPKGVLLYGPPGTGKDIIS 640
V + I P+GVL +GPPGTGK +++
Sbjct: 397 VFLHLHITPPRGVLFHGPPGTGKTLMA 423
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 33.1 bits (72), Expect = 0.037
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +3
Query: 489 VGGLDKQIKEIKEVIELPVKHPELF*CPLGLRNQKESYCM-GLRALEKTLLARAVA 653
+ GLD +KE + P PELF GLR + + G KT+LARAVA
Sbjct: 381 IAGLDDAKNSLKEAVIYPFLRPELF---QGLREPVQGMLLFGPPGTGKTMLARAVA 433
Score = 31.9 bits (69), Expect = 0.085
Identities = 12/23 (52%), Positives = 20/23 (86%), Gaps = 1/23 (4%)
Frame = +2
Query: 575 GIAQP-KGVLLYGPPGTGKDIIS 640
G+ +P +G+LL+GPPGTGK +++
Sbjct: 407 GLREPVQGMLLFGPPGTGKTMLA 429
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 32.3 bits (70), Expect = 0.065
Identities = 12/23 (52%), Positives = 20/23 (86%), Gaps = 1/23 (4%)
Frame = +2
Query: 575 GIAQP-KGVLLYGPPGTGKDIIS 640
G+ +P +G+LL+GPPGTGK +++
Sbjct: 487 GLREPARGMLLFGPPGTGKTMLA 509
Score = 29.5 bits (63), Expect = 0.46
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +3
Query: 480 YEMVGGLDKQIKEIKEVIELPVKHPELF*CPLGLRNQKESYCM-GLRALEKTLLARAVA 653
++ + GL+ +KE + P P+LF GLR + G KT+LARAVA
Sbjct: 458 WDDISGLEFAKHSLKEAVVYPFLRPDLF---QGLREPARGMLLFGPPGTGKTMLARAVA 513
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 32.3 bits (70), Expect = 0.065
Identities = 12/18 (66%), Positives = 16/18 (88%)
Frame = +2
Query: 587 PKGVLLYGPPGTGKDIIS 640
P+GVLL GPPGTGK +++
Sbjct: 300 PRGVLLTGPPGTGKTMLA 317
>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 30.7 bits (66), Expect = 0.20
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +2
Query: 575 GIAQPKGVLLYGPPGTGKDIIS 640
G P+G +L GPPGTGK +++
Sbjct: 325 GAKIPRGAILSGPPGTGKTLLA 346
>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 449
Score = 30.7 bits (66), Expect = 0.20
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +2
Query: 575 GIAQPKGVLLYGPPGTGK 628
GI +G LLYGPPG+GK
Sbjct: 238 GIPYRRGYLLYGPPGSGK 255
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 27.9 bits (59), Expect = 1.4
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +2
Query: 587 PKGVLLYGPPGTGKDIISSCCRS 655
P G+LL+G PG GK ++S S
Sbjct: 640 PTGILLFGYPGCGKTYLASAISS 662
>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 27.9 bits (59), Expect = 1.4
Identities = 12/20 (60%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Frame = +2
Query: 596 VLLYGPPGTGK-DIISSCCR 652
+L YGPPGTGK I +C R
Sbjct: 59 MLFYGPPGTGKTSTILACAR 78
>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 934
Score = 27.5 bits (58), Expect = 1.8
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +2
Query: 569 PFGIAQPKGVLLYGPPGTGK 628
P G+ K VLL GPPG GK
Sbjct: 403 PDGLGLYKAVLLSGPPGIGK 422
>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 660
Score = 26.6 bits (56), Expect = 3.2
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +2
Query: 572 FGIAQPKGVLLYGPPGTGK 628
F IA + L++GPPGTGK
Sbjct: 220 FSIAVKELSLIHGPPGTGK 238
>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 26.6 bits (56), Expect = 3.2
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +3
Query: 468 PDSTYEMVGGLDKQIKEIKEV 530
P +YE++ GLDKQ + K+V
Sbjct: 18 PKESYELLHGLDKQYQSTKDV 38
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 26.6 bits (56), Expect = 3.2
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -3
Query: 361 TSLISTFLSKSTTNLPSG*TFTRTFFLSIGLTT 263
TS+IS+ S S T++PS + +FF + G T+
Sbjct: 822 TSIISSIASSSYTSIPSISSIASSFFDASGFTS 854
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 25.8 bits (54), Expect = 5.6
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +3
Query: 123 EELQLIVAEKSQNLRRLQAQ 182
EEL+LI K ++ RRLQAQ
Sbjct: 275 EELELIAERKRESGRRLQAQ 294
>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
Upf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 25.8 bits (54), Expect = 5.6
Identities = 16/33 (48%), Positives = 21/33 (63%)
Frame = +2
Query: 545 EAPRAVLMPFGIAQPKGVLLYGPPGTGKDIISS 643
EA RAVL ++P L+ GPPGTGK + S+
Sbjct: 399 EAVRAVL-----SKPLS-LIQGPPGTGKTVTSA 425
>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 818
Score = 25.8 bits (54), Expect = 5.6
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = +2
Query: 413 NTTQQSRSSCVAHDGRESAGLYLRNGRWSRQTNQGD 520
N+T + SS A+ +S+G ++ NG+ + + G+
Sbjct: 233 NSTSKVMSSASANKPSKSSGFHINNGKSKEEKSHGE 268
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 25.4 bits (53), Expect = 7.4
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +2
Query: 557 AVLMPFGIAQPKGVLLYGPPGTGKDII 637
A + F + + + V+ GPPG+GK ++
Sbjct: 2503 AEFLNFSLTKNRCVIFCGPPGSGKSML 2529
>SPCC1020.03 |||mitochondrial iron ion
transporter|Schizosaccharomyces pombe|chr 3|||Manual
Length = 397
Score = 25.0 bits (52), Expect = 9.8
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Frame = +3
Query: 456 VEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELF*CPLGLRNQ---KESYCMGLRALE 626
+ V T+ G DK++ E+ + ++ K PEL LGL + + +G AL+
Sbjct: 40 MHSVGSHTHTHDHGSDKEMLELVKALKKEGKSPELKLAWLGLYSNIGLAAAKGIGGVALQ 99
Query: 627 KTLLARAVAHHTG 665
++L AH G
Sbjct: 100 SSILVADAAHQLG 112
>SPCC4G3.08 |psk1||serine/threonine protein kinase
Psk1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 436
Score = 25.0 bits (52), Expect = 9.8
Identities = 12/17 (70%), Positives = 12/17 (70%)
Frame = -2
Query: 206 NFSVEFITLGLKTTKIL 156
NFSVEF L L TT IL
Sbjct: 379 NFSVEFTKLPLSTTPIL 395
>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
Mts4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 25.0 bits (52), Expect = 9.8
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +3
Query: 450 MMVEKVPDSTYEMVGGLDKQIKEI 521
++V+ V D+T E+VG Q+KEI
Sbjct: 59 LLVQAVQDATPELVGSSLTQLKEI 82
>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 525
Score = 25.0 bits (52), Expect = 9.8
Identities = 7/26 (26%), Positives = 18/26 (69%)
Frame = +3
Query: 459 EKVPDSTYEMVGGLDKQIKEIKEVIE 536
+ +P+S + MVG +D +K+ +++ +
Sbjct: 496 DSLPESAFYMVGSIDDAVKKAEKIAQ 521
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,604,841
Number of Sequences: 5004
Number of extensions: 50862
Number of successful extensions: 226
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -