Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5402
(355 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr... 27 1.1
SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces pomb... 26 2.0
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po... 25 2.6
SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase |Schiz... 25 2.6
SPBC15C4.01c |oca3||TPR repeat protein Oca3|Schizosaccharomyces ... 25 3.4
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 25 4.5
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 25 4.5
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei... 25 4.5
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc... 24 6.0
SPBC16A3.06 |||tRNA specific adenosine deaminase |Schizosaccharo... 24 7.9
>SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 319
Score = 26.6 bits (56), Expect = 1.1
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = -1
Query: 205 IPQAG-TNFSNEIRTQQMFTIDFHGEGITSCNKNQTRKIMICVISGEAVMRFGLKGRA 35
+PQ T FS E++ + +I+ EG T K +T + +C+ A LKG+A
Sbjct: 205 LPQKNITIFSKELKENEFESIN---EGETEEEKAKTSNVCVCIPCKSAEQITDLKGQA 259
>SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 510
Score = 25.8 bits (54), Expect = 2.0
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +3
Query: 111 LLHDVIPSPWKSIVNIC*VRISLEKLVPACGIRTPVD 221
+L+ V P K+ +N+ ISLE P CG+ P D
Sbjct: 266 ILYMVSKEPGKACMNM--YDISLESTYPTCGMDWPYD 300
>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 743
Score = 25.4 bits (53), Expect = 2.6
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Frame = +3
Query: 42 PFR-PKR--ITASPLITQIIILRV*FLLHDVIPSPWKSIVNI 158
PF+ P+R + +T I+L + F+LHD S W+S+V I
Sbjct: 205 PFKIPRRHFLRDVAFLTGTILLVIMFVLHDGSLSIWQSLVMI 246
>SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 603
Score = 25.4 bits (53), Expect = 2.6
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 26 YNGCPTLQTETHYCFTTNYANHNFAGLIFITR 121
Y CP L + +CF+ A+HN A + + R
Sbjct: 517 YPACPLLTSRVRFCFS---ASHNKADMDYFLR 545
>SPBC15C4.01c |oca3||TPR repeat protein Oca3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 282
Score = 25.0 bits (52), Expect = 3.4
Identities = 12/50 (24%), Positives = 23/50 (46%)
Frame = +2
Query: 59 HYCFTTNYANHNFAGLIFITRCYSFTVEVNREHLLSTYFIRKIGTRLRDS 208
HYC + F G I++C +E++R L + K+ ++ D+
Sbjct: 200 HYCRSVEICEEYFHGWFGISKCCQQLLELSRTEL--KRLLSKVNEKISDT 247
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1388
Score = 24.6 bits (51), Expect = 4.5
Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Frame = +3
Query: 177 LEKLVPACGIRTPVDRFNT-NAPD 245
L+ VPA RT +D FN N+PD
Sbjct: 736 LDGTVPAAVRRTSIDHFNAPNSPD 759
>SPBC3E7.01 |fab1|ste12,
SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1932
Score = 24.6 bits (51), Expect = 4.5
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -1
Query: 220 STGVRIPQAGTNFSNEIRTQQMF 152
+T IP+A +F+N+I TQ F
Sbjct: 1301 ATSSDIPKANIDFTNDISTQNTF 1323
>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 968
Score = 24.6 bits (51), Expect = 4.5
Identities = 9/32 (28%), Positives = 18/32 (56%)
Frame = -1
Query: 148 IDFHGEGITSCNKNQTRKIMICVISGEAVMRF 53
++ G ++CN N K+M V+ G +M++
Sbjct: 826 LNLSGLSSSTCNANSVNKLMKHVMMGNEMMKY 857
>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
Apc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1458
Score = 24.2 bits (50), Expect = 6.0
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +3
Query: 6 SKVSSIVTTAALPFRPKRITASPLITQIIILRV*FLLHD 122
+K+ S+ +A LP + SPL IL + L HD
Sbjct: 891 TKLLSVHISALLPVGSNELNISPLTQTAGILGIGLLFHD 929
>SPBC16A3.06 |||tRNA specific adenosine deaminase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 23.8 bits (49), Expect = 7.9
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = +1
Query: 181 KNWYPPAGFEHRWI 222
KNW P G E +WI
Sbjct: 375 KNWIPNGGNEFQWI 388
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,385,234
Number of Sequences: 5004
Number of extensions: 26886
Number of successful extensions: 60
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 105935336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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