Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5401
         (343 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    26   1.4  
SPAC23G3.07c |snf30||SWI/SNF complex subunit Snf30|Schizosacchar...    26   1.8  
SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces pombe...    25   3.2  
SPAC5H10.08c |pan6||pantoate-beta-alanine ligase |Schizosaccharo...    24   5.6  
SPBC18H10.09 |||zinc finger protein, zf-CHY type|Schizosaccharom...    24   7.5  
SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|c...    23   9.8  
SPACUNK4.17 |||NAD binding dehydrogenase family protein|Schizosa...    23   9.8  
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch...    23   9.8  
SPCC1183.10 |wtf10||wtf element Wtf10|Schizosaccharomyces pombe|...    23   9.8  

>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 26.2 bits (55), Expect = 1.4
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +3

Query: 183 KAAVKIYKSQALHNGNEKHGIRKYSGGPPLH 275
           KA  K  K  A+       G + Y GGPP+H
Sbjct: 540 KAISKRGKDFAMRRDERFRGRKPYRGGPPIH 570


>SPAC23G3.07c |snf30||SWI/SNF complex subunit
           Snf30|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 274

 Score = 25.8 bits (54), Expect = 1.8
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 139 VVFPPLRCSKSSAQLKPLSK 198
           V+ PPL C +S  QL+PL K
Sbjct: 91  VLTPPLSCPESLPQLEPLYK 110


>SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 513

 Score = 25.0 bits (52), Expect = 3.2
 Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
 Frame = +3

Query: 138 CRLSTVALQQKFSTIKAAVKIYKSQALHN----GNEKHGIRKYSGGPPLHLRPYKKVENC 305
           C +S    +Q+ S +   +   +S  L N    GN       YSG   L     ++V NC
Sbjct: 93  CTVSLKRYRQRKS-VYPMLMFLRSSLLRNFGNIGNSSLYTENYSGTKILIEEYVREVNNC 151

Query: 306 LSFNFMTK 329
           L F + TK
Sbjct: 152 LEFLYHTK 159


>SPAC5H10.08c |pan6||pantoate-beta-alanine ligase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 283

 Score = 24.2 bits (50), Expect = 5.6
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 157 RCSKSSAQLKPLSKYTKVRPFTMGTRNMVSASTA 258
           RC     QL+ +   T + PFT GT+N+V  + A
Sbjct: 235 RCRFIPDQLE-ICDSTTLEPFTAGTKNVVILAAA 267


>SPBC18H10.09 |||zinc finger protein, zf-CHY
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 23.8 bits (49), Expect = 7.5
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +2

Query: 59  NGCCEYFPKCFPW 97
           NG CE++ K F W
Sbjct: 326 NGACEHYKKSFRW 338


>SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 679

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 16/73 (21%), Positives = 27/73 (36%)
 Frame = +1

Query: 37  KHFVSLKKWLLRIFSEVLSVVYCGDQQRIERP*HVVFPPLRCSKSSAQLKPLSKYTKVRP 216
           KH V  + W     SEVL  +   D        H  F P+    +  +    ++      
Sbjct: 164 KHIVDARMWTEAYMSEVLRSLLYSDDTNSRFAGHRRFNPIPNPDAELRFFEAAEQLFTLG 223

Query: 217 FTMGTRNMVSAST 255
           +T+G+ + V   T
Sbjct: 224 YTLGSSSEVRVPT 236


>SPACUNK4.17 |||NAD binding dehydrogenase family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 405

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +3

Query: 159 LQQKFSTIKAAVKIYKSQALHNGNEKHGIRKYSGGP 266
           +++K   + + V  Y S  +HN  +   I   SGGP
Sbjct: 201 IKEKNLKVVSTVAKYNSAYIHNSKKFWWIMSESGGP 236


>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
           Eme1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +1

Query: 199 YTKVR-PFTMGTRNMVSASTAGALPSTLDLIKK*RTACPSTL*P 327
           + K+R P    T +   AST+ +    LD +KK R  C  +L P
Sbjct: 337 FKKMRLPKISRTTDTPPASTSNSNKKNLDKLKKMRKLCSRSLEP 380


>SPCC1183.10 |wtf10||wtf element Wtf10|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 258

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 17/36 (47%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
 Frame = +1

Query: 22  C*KKIKHFVSLKKW--LLRIFSEVLSVVYCGDQQRI 123
           C K IKHF  LKKW  +   FSEV      G   RI
Sbjct: 152 CGKGIKHF--LKKWENMPMAFSEVFLFNIFGGALRI 185


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,396,562
Number of Sequences: 5004
Number of extensions: 25602
Number of successful extensions: 76
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 100068878
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)