Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5401
(343 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0674 - 21745321-21746223,21746229-21747608 28 1.7
07_03_1642 - 28319790-28321445 28 1.7
07_03_1305 - 25638531-25638584,25638909-25638990,25639087-256391... 28 2.2
02_03_0264 + 17059279-17059638,17060226-17060260,17060307-170603... 27 2.9
02_01_0037 + 261405-261779,261880-262065,262185-262271,262341-26... 27 3.9
10_08_0742 + 20244984-20247008 27 5.1
09_02_0435 - 9384225-9384412,9385084-9385133,9385209-9385274,938... 27 5.1
01_03_0311 + 14905995-14906393,14906982-14907009,14907893-149079... 27 5.1
05_07_0050 + 27332855-27333009,27333725-27333790,27333971-273340... 26 6.7
04_04_0919 - 29422003-29422267,29422411-29422660,29423163-294234... 26 6.7
03_03_0210 + 15470680-15470715,15473088-15473342,15473417-154734... 26 6.7
>12_02_0674 - 21745321-21746223,21746229-21747608
Length = 760
Score = 28.3 bits (60), Expect = 1.7
Identities = 20/45 (44%), Positives = 23/45 (51%)
Frame = +1
Query: 187 PLSKYTKVRPFTMGTRNMVSASTAGALPSTLDLIKK*RTACPSTL 321
PLS T P T GT + +AST G LPS +K TAC L
Sbjct: 460 PLSSSTSEIPTTTGTSELSTAST-GELPS--PTVKIPTTACTGEL 501
>07_03_1642 - 28319790-28321445
Length = 551
Score = 28.3 bits (60), Expect = 1.7
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +1
Query: 229 TRNMVSASTAGALPSTLDLIKK*RTACPSTL*P 327
T +++S AG L + DL+K+ T+CP ++ P
Sbjct: 111 TSSLLSLRRAGHLDTAADLLKQAATSCPDSVTP 143
>07_03_1305 -
25638531-25638584,25638909-25638990,25639087-25639169,
25639252-25639515,25639984-25640060,25640183-25640277,
25640953-25641065
Length = 255
Score = 27.9 bits (59), Expect = 2.2
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Frame = +2
Query: 146 FHRCVAAKVQHN*SRCQNIQK----SGPSQWERETWYPQVQRGPSPPP 277
+HRCVAAK + C+ K PS+W E W Q + G P P
Sbjct: 209 YHRCVAAKGE-GAPECEKFAKYYRSLCPSEW-IERWNEQRENGTFPGP 254
>02_03_0264 +
17059279-17059638,17060226-17060260,17060307-17060385,
17060580-17061123,17061328-17061404
Length = 364
Score = 27.5 bits (58), Expect = 2.9
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = -2
Query: 267 EGPRCTCGYHVSRSHCEGP 211
+GP+ C YH+++SH P
Sbjct: 262 DGPKALCEYHLAKSHSNTP 280
>02_01_0037 +
261405-261779,261880-262065,262185-262271,262341-262420,
262518-262599,262794-262814,263204-263249,263365-263483,
263685-263798,263885-263959,264068-264157,264604-264713,
264902-265160
Length = 547
Score = 27.1 bits (57), Expect = 3.9
Identities = 16/57 (28%), Positives = 31/57 (54%)
Frame = +3
Query: 24 LKENKAFRELEEMAAANIFRSAFRGLLRRSTTYRTSVTCRLSTVALQQKFSTIKAAV 194
+++ K R++ + +AN+ +SAF + R+ Y+ V A QK+ I++AV
Sbjct: 265 IQQEKKGRDVYILGSANVGKSAFISAMLRTMAYKDPV------AAAAQKYKPIQSAV 315
>10_08_0742 + 20244984-20247008
Length = 674
Score = 26.6 bits (56), Expect = 5.1
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +3
Query: 15 RELLKENKAFRELEEMAAANIFRSAFRGLLRRS 113
REL K F+ E + A F +RG+LRRS
Sbjct: 347 RELYMATKGFKNSELLGAGG-FGEVYRGVLRRS 378
>09_02_0435 -
9384225-9384412,9385084-9385133,9385209-9385274,
9385360-9385451,9385893-9385975,9386181-9386259,
9386888-9387115,9387196-9387297,9387719-9387854,
9387984-9388033,9389391-9389618
Length = 433
Score = 26.6 bits (56), Expect = 5.1
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = -1
Query: 157 ATVERRHVTDVLYVVDLRNRPRKALRKIFAAAI 59
AT + V D ++VVDL ALRK+F ++I
Sbjct: 242 ATKDGTGVRDYIHVVDLAEGHIAALRKLFESSI 274
>01_03_0311 +
14905995-14906393,14906982-14907009,14907893-14907930,
14908741-14908878,14909180-14909356,14909497-14909550,
14909713-14909813,14910445-14910739
Length = 409
Score = 26.6 bits (56), Expect = 5.1
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +1
Query: 169 SSAQLKPLSKYTKVRPFTMGTRNMVSAST 255
++A+L+PL+ T+ RP T V+A+T
Sbjct: 35 TTARLRPLAAVTRTRPVTAARSRPVAATT 63
>05_07_0050 +
27332855-27333009,27333725-27333790,27333971-27334030,
27334425-27334515,27334893-27335073,27336037-27336128,
27336672-27336995
Length = 322
Score = 26.2 bits (55), Expect = 6.7
Identities = 6/18 (33%), Positives = 14/18 (77%)
Frame = +2
Query: 194 QNIQKSGPSQWERETWYP 247
+++ + P+QW+++ WYP
Sbjct: 218 RSLSQFTPAQWDKDQWYP 235
>04_04_0919 -
29422003-29422267,29422411-29422660,29423163-29423481,
29423625-29424794,29424879-29425388,29425449-29425607
Length = 890
Score = 26.2 bits (55), Expect = 6.7
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +3
Query: 282 PYKKVENCLSFNFMTKINP 338
PY ++ CL +++ KINP
Sbjct: 194 PYARIWRCLDYDYALKINP 212
>03_03_0210 +
15470680-15470715,15473088-15473342,15473417-15473499,
15473617-15473698,15474886-15474939
Length = 169
Score = 26.2 bits (55), Expect = 6.7
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Frame = +2
Query: 146 FHRCVAAKVQHN*SRCQNIQK----SGPSQWERETWYPQVQRGPSPPP 277
+HRCVAAK + + C K P +W E W Q + G P P
Sbjct: 123 YHRCVAAKGE-DAPECDKFAKYYRSLCPGEWV-ERWNEQRENGTFPGP 168
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,624,772
Number of Sequences: 37544
Number of extensions: 182757
Number of successful extensions: 582
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 581
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 482105440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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