Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5401
         (343 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   1.8  
AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.        22   1.8  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   4.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    20   7.2  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    20   7.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    20   7.2  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 1.8
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 102 LRRSTTYRTSVTCRLSTVAL 161
           LR S    TS  C+L+ VAL
Sbjct: 262 LRSSENQNTSAECKLAKVAL 281


>AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.
          Length = 76

 Score = 22.2 bits (45), Expect = 1.8
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 102 LRRSTTYRTSVTCRLSTVAL 161
           LR S    TS  C+L+ VAL
Sbjct: 12  LRSSENQNTSAECKLAKVAL 31


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = -3

Query: 155 NGGKTTCYGRSIRC 114
           +   TTC G ++RC
Sbjct: 286 SSASTTCSGHTVRC 299


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1

Query: 148  PPLRCSKSSAQLKPLSKYT 204
            PPL  +    +LKP ++YT
Sbjct: 961  PPLPYAALIDELKPATRYT 979


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 154 LRCSKSSAQLKPLSKYTKVRPFT 222
           L  S SS  L P+S Y  V+P +
Sbjct: 310 LSTSGSSGILTPVSPYGYVKPIS 332


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1

Query: 148  PPLRCSKSSAQLKPLSKYT 204
            PPL  +    +LKP ++YT
Sbjct: 957  PPLPYAALIDELKPATRYT 975


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,020
Number of Sequences: 438
Number of extensions: 1982
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7839909
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)